G1680423


Basic Information

Item Value
gene id G1680423
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 27688971 ~ 27693140 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1922301
GTCTGACAGCGGATTTGCTCAATGTGTAGCTCAAGCGCACCTAGCAAATGCAATGGGTGTAGACGGAGAAGAAAATAGAGACCCAACTCGGCGGAAAATATTTTCCCTCCAGCAGATGTGACCCTGTGCTAACAAGGCTCCTGAGCCAATATCCTCCATTCCAGCTGGTCAGGACAGCCTTAAACAGCCCACGGAGCAGCTCAGCCTGGACAGAGCTACAAACAGATAATAAAGACAGTCCGTGATTGGGCATTCTCTCTTCATCGTCCAAAAGCTGTTTAGTTTGGTCCGAAGATTTCCTCAGTCTCTGGCTGGGGAACAGGATCCATTTCATAAAGGGATCAGAGCCACCATCTTGGCCTGACTTCATTGAGATGTGCTTCTCTGTCTAAATGGACTGTGTGGTCTGTTTTCTCTCCCACACAGAGATGTCTTAATCACGCTTGCTGTGCTGTGTGAGGGCCTTGTTGGAGATGTTGGCCCTCAGGCACCCTGGTCAGGCTTAGTTGTACTGCTTGATATGGATGGCGTTTTCCGGCCTCctcaggccagagttcaaactAGCCCACAAACTAGCCCACCTCCTGCTGAACAACTCGGAGGTGTAACATCTCACGCTGATCAAGTGCAACTCTGTAGGAAGCAAGCCAGCCTTTTTGGACTCTTTCACAGTACAACATCTGCAGAGGCTGACTGTGTCTTACCCCGTGTGTGGGTCTGGCCAGACATATGACATCATACTGGGGAGGGAAATGGGTGCACCTTACTATGAAGAGACCAGGCTAGGAATCATCCACAGCTCAGTGCTGATGGGAGAATCCAATGTTGAAGGCCTATAAATTTCAAACCAATATAGACAGCAACGGAATCCTCCCTTTTTCATATCTCCTGTCTGAAGTCAAGCTACCAGAGACTTCCTGTATATTTGTAAttttttatatactgtactaaTGCAGATTCTTTTTTTCTATGCTATCATTGCCAATGTACCACTACCTATGTCTGTGACTACAATCTTCATAATCACTTTTGACCAAACAGAATGTTTATCCTTGTGGTGATTTCAATATAATAAGGTCAGGATTCAATCATTGCAGATGGTATATTTTCGCACTTCACTTTTAGGGGTGGGTTAGATTTACATAATAGCATGTCTCAAATTGTGCCATTACTTTTTTAGATATATGTTTTAGATATTTTCACTTCATTTAGACAGTAAGGAAATCAGAGGGGGAGACCGGCAGGTGGGAGGAACAGTGGACACGGGGATTGAACCCTGGTCCCCAGCGGGGAGTCTT

Function

NR:

description
hypothetical protein Z043_117867

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1922301 True 1298 lncRNA 0.46 2 27688971 27693140

Neighbor

gene id symbol gene type direction distance location
LOC110499283 LOC106589675 coding upstream 5064 27676593 ~ 27683907 (+)
map3k21 LOC106589668 coding upstream 62186 27610623 ~ 27626785 (+)
rgs17 LOC106589666 coding upstream 154487 27494428 ~ 27534484 (+)
phactr2 LOC106589662 coding upstream 324868 27307243 ~ 27364103 (+)
cog2 cog2 coding upstream 396879 27280844 ~ 27292092 (+)
LOC100136337 tnfaip3 coding downstream 77602 27770742 ~ 27786519 (+)
arfgef3 arfgef3 coding downstream 121249 27814389 ~ 27858095 (+)
lhb LOC100135809 coding downstream 171728 27864868 ~ 27866512 (+)
adss2 LOC106589688 coding downstream 250627 27943767 ~ 27969322 (+)
akt3a LOC106589689 coding downstream 334149 28027289 ~ 28169772 (+)
G1680421 NA non-coding upstream 13691 27674929 ~ 27675280 (+)
G1680420 NA non-coding upstream 14487 27674040 ~ 27674484 (+)
G1680415 NA non-coding upstream 17714 27671021 ~ 27671257 (+)
G1680412 NA non-coding upstream 21891 27666772 ~ 27667080 (+)
G1680411 NA non-coding upstream 22347 27666381 ~ 27666624 (+)
G1680611 NA non-coding downstream 15092 27708232 ~ 27708458 (+)
G1680647 NA non-coding downstream 40209 27733349 ~ 27734096 (+)
G1680694 NA non-coding downstream 74478 27767618 ~ 27768095 (+)
G1680705 NA non-coding downstream 94395 27787535 ~ 27788023 (+)
G1680711 NA non-coding downstream 101063 27794203 ~ 27794710 (+)
G1680230 NA other upstream 313152 27375354 ~ 27375819 (+)
G1679823 NA other upstream 601508 27084426 ~ 27087463 (+)
G1679135 NA other upstream 913291 26700392 ~ 26775680 (+)
LOC110499259 LOC106589644 other upstream 1032860 26654584 ~ 26656111 (+)
LOC110499256 LOC106589642 other upstream 1055773 26632095 ~ 26639269 (+)
G1681180 NA other downstream 1024221 28717361 ~ 28726495 (+)
G1681792 NA other downstream 1084866 28778006 ~ 28778409 (+)
lhcgr lhr other downstream 1764088 29437357 ~ 29458499 (+)
LOC110499316 LOC106589729 other downstream 1879295 29572397 ~ 29588171 (+)
G1686317 LOC106589755 other downstream 4961214 32654354 ~ 32661648 (+)

Expression


Co-expression Network