G1680711


Basic Information

Item Value
gene id G1680711
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 27794203 ~ 27794710 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1922610
GGGCCAATAATGGGTAGTAGATGGCATAAACAATCATTCCTGTTTAGGGCCTGGAATTCCCGAGGAACACCTACTGGCACACCTAGTAGGTTGAAATGTACATTATCCGTTACCTCAGACCAAGGTGCATCACGCTTATATCTGGAGTACGGGTGAACATCATTAGGTGCTTTTCTAGTTGATCCCAGGAGCTGATTAGCTGTAACTTCAATAATGGTTAGTGGTATTATCAGACTGGCTAAAGCACACATACCCTGCCAGTTACCTCTAAGGACAGGTGTTAAATGCCTGTTTGGGCCACACATCCACCATACATCAGCAACACCCTTAGTTTGATTCAAGCCTTTCACTGGCCAGGTGGCATTAATGGTTATGTTACTATTACAATCTGCAGTTACCTCCGTATACCTTAACACCCCATGGAGTCTTTTGAGGAGGGACTTCCGGGAACACTAGAGACAGAGTCTTAAAAAGGGTGGAGTTGGGTTTAACATGGTAAAAACTTTCC

Function

NR:

description
uncharacterized protein LOC110510149

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1922610 True 508 lncRNA 0.44 1 27794203 27794710

Neighbor

gene id symbol gene type direction distance location
LOC100136337 tnfaip3 coding upstream 7684 27770742 ~ 27786519 (+)
LOC110499283 LOC106589675 coding upstream 110296 27676593 ~ 27683907 (+)
map3k21 LOC106589668 coding upstream 167418 27610623 ~ 27626785 (+)
rgs17 LOC106589666 coding upstream 259719 27494428 ~ 27534484 (+)
phactr2 LOC106589662 coding upstream 430100 27307243 ~ 27364103 (+)
arfgef3 arfgef3 coding downstream 19679 27814389 ~ 27858095 (+)
lhb LOC100135809 coding downstream 70158 27864868 ~ 27866512 (+)
adss2 LOC106589688 coding downstream 149057 27943767 ~ 27969322 (+)
akt3a LOC106589689 coding downstream 232579 28027289 ~ 28169772 (+)
cep170aa cep170 coding downstream 431200 28225910 ~ 28293688 (+)
G1680705 NA non-coding upstream 6180 27787535 ~ 27788023 (+)
G1680694 NA non-coding upstream 26108 27767618 ~ 27768095 (+)
G1680647 NA non-coding upstream 60107 27733349 ~ 27734096 (+)
G1680611 NA non-coding upstream 85745 27708232 ~ 27708458 (+)
G1680423 NA non-coding upstream 101063 27688971 ~ 27693140 (+)
G1680714 NA non-coding downstream 3293 27798003 ~ 27798398 (+)
G1680722 perp non-coding downstream 10784 27805494 ~ 27808926 (+)
G1680780 NA non-coding downstream 142484 27937194 ~ 27937697 (+)
G1680704 NA non-coding downstream 196861 27991571 ~ 27992056 (+)
G1680826 NA non-coding downstream 231801 28026511 ~ 28026817 (+)
G1680230 NA other upstream 418384 27375354 ~ 27375819 (+)
G1679823 NA other upstream 706740 27084426 ~ 27087463 (+)
G1679135 NA other upstream 1018523 26700392 ~ 26775680 (+)
LOC110499259 LOC106589644 other upstream 1138092 26654584 ~ 26656111 (+)
LOC110499256 LOC106589642 other upstream 1161005 26632095 ~ 26639269 (+)
G1681180 NA other downstream 922651 28717361 ~ 28726495 (+)
G1681792 NA other downstream 983296 28778006 ~ 28778409 (+)
lhcgr lhr other downstream 1662518 29437357 ~ 29458499 (+)
LOC110499316 LOC106589729 other downstream 1777725 29572397 ~ 29588171 (+)
G1686317 LOC106589755 other downstream 4859644 32654354 ~ 32661648 (+)

Expression


Co-expression Network