Gene
RNA
| Item | Value |
|---|---|
| gene id | G1680714 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048584.1 |
| NCBI id | CM023238.2 |
| chromosome length | 46616863 |
| location | 27798003 ~ 27798398 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1922613 | True | 396 | lncRNA | 0.39 | 1 | 27798003 | 27798398 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC100136337 | tnfaip3 | coding | upstream | 11484 | 27770742 ~ 27786519 (+) |
| LOC110499283 | LOC106589675 | coding | upstream | 114096 | 27676593 ~ 27683907 (+) |
| map3k21 | LOC106589668 | coding | upstream | 171218 | 27610623 ~ 27626785 (+) |
| rgs17 | LOC106589666 | coding | upstream | 263519 | 27494428 ~ 27534484 (+) |
| phactr2 | LOC106589662 | coding | upstream | 433900 | 27307243 ~ 27364103 (+) |
| arfgef3 | arfgef3 | coding | downstream | 15991 | 27814389 ~ 27858095 (+) |
| lhb | LOC100135809 | coding | downstream | 66470 | 27864868 ~ 27866512 (+) |
| adss2 | LOC106589688 | coding | downstream | 145369 | 27943767 ~ 27969322 (+) |
| akt3a | LOC106589689 | coding | downstream | 228891 | 28027289 ~ 28169772 (+) |
| cep170aa | cep170 | coding | downstream | 427512 | 28225910 ~ 28293688 (+) |
| G1680711 | NA | non-coding | upstream | 3293 | 27794203 ~ 27794710 (+) |
| G1680705 | NA | non-coding | upstream | 9980 | 27787535 ~ 27788023 (+) |
| G1680694 | NA | non-coding | upstream | 29908 | 27767618 ~ 27768095 (+) |
| G1680647 | NA | non-coding | upstream | 63907 | 27733349 ~ 27734096 (+) |
| G1680611 | NA | non-coding | upstream | 89545 | 27708232 ~ 27708458 (+) |
| G1680722 | perp | non-coding | downstream | 7096 | 27805494 ~ 27808926 (+) |
| G1680780 | NA | non-coding | downstream | 138796 | 27937194 ~ 27937697 (+) |
| G1680704 | NA | non-coding | downstream | 193173 | 27991571 ~ 27992056 (+) |
| G1680826 | NA | non-coding | downstream | 228113 | 28026511 ~ 28026817 (+) |
| G1680874 | NA | non-coding | downstream | 300079 | 28098477 ~ 28099570 (+) |
| G1680230 | NA | other | upstream | 422184 | 27375354 ~ 27375819 (+) |
| G1679823 | NA | other | upstream | 710540 | 27084426 ~ 27087463 (+) |
| G1679135 | NA | other | upstream | 1022323 | 26700392 ~ 26775680 (+) |
| LOC110499259 | LOC106589644 | other | upstream | 1141892 | 26654584 ~ 26656111 (+) |
| LOC110499256 | LOC106589642 | other | upstream | 1164805 | 26632095 ~ 26639269 (+) |
| G1681180 | NA | other | downstream | 918963 | 28717361 ~ 28726495 (+) |
| G1681792 | NA | other | downstream | 979608 | 28778006 ~ 28778409 (+) |
| lhcgr | lhr | other | downstream | 1658830 | 29437357 ~ 29458499 (+) |
| LOC110499316 | LOC106589729 | other | downstream | 1774037 | 29572397 ~ 29588171 (+) |
| G1686317 | LOC106589755 | other | downstream | 4855956 | 32654354 ~ 32661648 (+) |
