G1680722 (perp)


Basic Information

Item Value
gene id G1680722
gene name perp
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 27805494 ~ 27808926 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1922623
gtgaaaaaaaactatttattgTGTAAAAAAGACACTACTTGAAAATGATCTATTTAAACTACTAAATAAACAACGATGGTTACCAGAATGTTATTGAGTATGGATATGACCTTTTCCATTTCAACTGACATGACTTGTTATGAGTCCATAGGAAGTCCTTTTCGATATGTCAACAACACATTTTATGGAAAATGAAGGCACGTCTGAGTATGACATTAGCCTTGTGTAACAGACTCATGGGGCTCTCTTGATGCTGTTAAAAGAGATGTCTCCTACAAGCATTAAGTCAAATGCAGAATGAACTGTACATCTAACAGTCTGTGGTTGGGTGCTTCAAGTTGGTTACCATTATCAACAAATGTAGTGGACATTACgttttaaaaacattgtatttccCCTTTATTTGTGTTTTAGATTTCAAAAGGTGTCTCTAACAATACAATACAGCAATACACATTGTCATACCCATTCATTTTCAAATCAAGAAAATTGTCCTTGTTGGagtaagaaaacaaaaatataaaaaaagacaAAATATCTTGCATTGAGATACAGCTTTGTGTTGCATAATACAATGACTATAAAGGGAATTCTTAAACTAATTTAACAAAAGCAAAAACACATCTCTTCCTTGCACCATACTgtacagcagggctctccaactctgttcctggggAGCTATCcccctgtaggtttttgctccaaacCTAGTTGTAACTAACCTCATTCCGCTCATCGactagctaattattagaatcaggtgggCTATATtagggttggattgaaaacctacaggatggtagctctccaggaacagggttggagagccctgcagtacAGTATACATTCATGTTTCCATTTTCTCTACTGTACTTACGATAATTCAGTTTTGCCATTCAATGGCCTCAACAATTCAAATTAGAATTAAAGTGATTAAAGCTTTGAAAAGCAACATCTTAAAACATCCATTAATACGAGACCAAATAACAATGCTGCAGTCAAATGCATTAGCATTGTGTGTAGGACATACACCCTCTTACTCAGCTGGTTAGATCCCTTGACATAATCCACAAACTCTAAAGGATGGACTCCTTAACATTGATATTAAGTGCACTTCTGTGATTTTGCATTAAACTAATTTACAATGGAGAATTATAGCAAGGGTCTGGATAAGATTATGGAGGATTATGTGAATGTTTTATGTATAATCTGAAATATTGCATCTGGGTCACTTCAACTACTCTACACAAACGTCAAGCGTGGAAAACTTCCAATGTGATAGAAACAAAGCCTCTGGAATAGCCATACCTGGCAGCCTCCCTTGGTAACATGTGGGCCACTCAAATCAATATGCGGGTCAGTATAGGGTCGGAAATAGGGCGTTAGACAGAGATACACATCTATGGGATCCTTCCAACGGAGAGGGCATTCAGCATTGTTGGAAATGACTAAATTGACATCCCAATGATATGTCTAAGTGTCAGTGTCCTCTGGCCTCTGTGGTGGCAGAGGTGCTTCTGTCCTGGggatgcatctcaatagtctaaagtgggcttcctctcctcatctcctctccttcatctgcactgatgtgAAAGAACCTGGCAGGTGTCCTCTATTTTGCTTACACTTATCCTGTGTTttcatcagtgcagatgaagggaaggagatgcGGAGAAGGGAAGCCTTttcagactattgagatgtaGCCTGGGGGTGTCTGTGGTTCCTCTAAGCTGATGTATAGATGTATTTGGTCTTGGCGAGGCCTGTGAGCTCGTCCTCGTAGCGAGGCAGGCAGCAGAAGAGGATCCCACAGCCGATGGTGAGGATGGTGGCCCCCCAGCCGAAGCCATAGGCCCAGGTGTAGTCATAGTGGCCCTCGAAGATCAGGTCATTGAACTTGACTGGGTATATGATGAGGGCGATGAACTGAATGACCCAGTGATGAAGAGCAAGGCCCCAATGACGGGCAGCAGGCTGATGTTGAGGGTGCAGCAGAGGGCGATACAGGAGATGATGAAAgcgatgatgaggatgatgaggcCGATGATCATAAGAGCTGCCACAGCCTGGGCCCAAGCTGAAAACACATCAACAAACAGTGTTTACTATCTATAGACACGACTTGGGCTAAACATATTTCTAGAAAGATTGTTAAATACCTATATACTTTTGAGCTGGGAAgtacagatgttggatcttaat

Function

symbol description
perp Acts upstream of or within apoptotic process involved in blood vessel morphogenesis; regulation of apoptotic process; and response to UV. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell-cell junction. Is expressed in several structures, including EVL; axial chorda mesoderm; digestive system; epidermis; and nervous system. Human ortholog(s) of this gene implicated in erythrokeratodermia variabilis and mutilating palmoplantar keratoderma with periorificial keratotic plaques. Orthologous to human PERP (p53 apoptosis effector related to PMP22).

NR:

description
PREDICTED: p53 apoptosis effector related to PMP-22

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1922623 True 2208 lncRNA 0.41 2 27805494 27808926

Neighbor

gene id symbol gene type direction distance location
LOC100136337 tnfaip3 coding upstream 18975 27770742 ~ 27786519 (+)
LOC110499283 LOC106589675 coding upstream 121587 27676593 ~ 27683907 (+)
map3k21 LOC106589668 coding upstream 178709 27610623 ~ 27626785 (+)
rgs17 LOC106589666 coding upstream 271010 27494428 ~ 27534484 (+)
phactr2 LOC106589662 coding upstream 441391 27307243 ~ 27364103 (+)
arfgef3 arfgef3 coding downstream 5463 27814389 ~ 27858095 (+)
lhb LOC100135809 coding downstream 55942 27864868 ~ 27866512 (+)
adss2 LOC106589688 coding downstream 134841 27943767 ~ 27969322 (+)
akt3a LOC106589689 coding downstream 218363 28027289 ~ 28169772 (+)
cep170aa cep170 coding downstream 416984 28225910 ~ 28293688 (+)
G1680714 NA non-coding upstream 7096 27798003 ~ 27798398 (+)
G1680711 NA non-coding upstream 10784 27794203 ~ 27794710 (+)
G1680705 NA non-coding upstream 17471 27787535 ~ 27788023 (+)
G1680694 NA non-coding upstream 37399 27767618 ~ 27768095 (+)
G1680647 NA non-coding upstream 71398 27733349 ~ 27734096 (+)
G1680780 NA non-coding downstream 128268 27937194 ~ 27937697 (+)
G1680704 NA non-coding downstream 182645 27991571 ~ 27992056 (+)
G1680826 NA non-coding downstream 217585 28026511 ~ 28026817 (+)
G1680874 NA non-coding downstream 289551 28098477 ~ 28099570 (+)
G1680230 NA other upstream 429675 27375354 ~ 27375819 (+)
G1679823 NA other upstream 718031 27084426 ~ 27087463 (+)
G1679135 NA other upstream 1029814 26700392 ~ 26775680 (+)
LOC110499259 LOC106589644 other upstream 1149383 26654584 ~ 26656111 (+)
LOC110499256 LOC106589642 other upstream 1172296 26632095 ~ 26639269 (+)
G1681180 NA other downstream 908435 28717361 ~ 28726495 (+)
G1681792 NA other downstream 969080 28778006 ~ 28778409 (+)
lhcgr lhr other downstream 1648302 29437357 ~ 29458499 (+)
LOC110499316 LOC106589729 other downstream 1763509 29572397 ~ 29588171 (+)
G1686317 LOC106589755 other downstream 4845428 32654354 ~ 32661648 (+)

Expression


Co-expression Network