Gene
RNA
| Item | Value |
|---|---|
| gene id | G1680826 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048584.1 |
| NCBI id | CM023238.2 |
| chromosome length | 46616863 |
| location | 28026511 ~ 28026817 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1922739 | True | 307 | lncRNA | 0.38 | 1 | 28026511 | 28026817 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| adss2 | LOC106589688 | coding | upstream | 57189 | 27943767 ~ 27969322 (+) |
| lhb | LOC100135809 | coding | upstream | 159999 | 27864868 ~ 27866512 (+) |
| arfgef3 | arfgef3 | coding | upstream | 168416 | 27814389 ~ 27858095 (+) |
| LOC100136337 | tnfaip3 | coding | upstream | 239992 | 27770742 ~ 27786519 (+) |
| LOC110499283 | LOC106589675 | coding | upstream | 342604 | 27676593 ~ 27683907 (+) |
| akt3a | LOC106589689 | coding | downstream | 472 | 28027289 ~ 28169772 (+) |
| cep170aa | cep170 | coding | downstream | 199093 | 28225910 ~ 28293688 (+) |
| abcg8 | abcg8 | coding | downstream | 289672 | 28316489 ~ 28331818 (+) |
| ppm1ba | ppm1b | coding | downstream | 451983 | 28478800 ~ 28525093 (+) |
| slc3a1 | slc3a1 | coding | downstream | 498652 | 28525469 ~ 28534588 (+) |
| G1680704 | NA | non-coding | upstream | 34455 | 27991571 ~ 27992056 (+) |
| G1680780 | NA | non-coding | upstream | 88814 | 27937194 ~ 27937697 (+) |
| G1680722 | perp | non-coding | upstream | 217585 | 27805494 ~ 27808926 (+) |
| G1680714 | NA | non-coding | upstream | 228113 | 27798003 ~ 27798398 (+) |
| G1680711 | NA | non-coding | upstream | 231801 | 27794203 ~ 27794710 (+) |
| G1680874 | NA | non-coding | downstream | 71660 | 28098477 ~ 28099570 (+) |
| G1680964 | NA | non-coding | downstream | 228399 | 28255216 ~ 28255554 (+) |
| G1680968 | NA | non-coding | downstream | 234278 | 28261095 ~ 28261302 (+) |
| G1680969 | NA | non-coding | downstream | 235020 | 28261837 ~ 28262116 (+) |
| G1680230 | NA | other | upstream | 650692 | 27375354 ~ 27375819 (+) |
| G1679823 | NA | other | upstream | 939048 | 27084426 ~ 27087463 (+) |
| G1679135 | NA | other | upstream | 1250831 | 26700392 ~ 26775680 (+) |
| LOC110499259 | LOC106589644 | other | upstream | 1370400 | 26654584 ~ 26656111 (+) |
| LOC110499256 | LOC106589642 | other | upstream | 1393313 | 26632095 ~ 26639269 (+) |
| G1681180 | NA | other | downstream | 690544 | 28717361 ~ 28726495 (+) |
| G1681792 | NA | other | downstream | 751189 | 28778006 ~ 28778409 (+) |
| lhcgr | lhr | other | downstream | 1430411 | 29437357 ~ 29458499 (+) |
| LOC110499316 | LOC106589729 | other | downstream | 1545618 | 29572397 ~ 29588171 (+) |
| G1686317 | LOC106589755 | other | downstream | 4627537 | 32654354 ~ 32661648 (+) |
