Gene
RNA
| Item | Value |
|---|---|
| gene id | G1680874 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048584.1 |
| NCBI id | CM023238.2 |
| chromosome length | 46616863 |
| location | 28098477 ~ 28099570 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1922791 | True | 356 | lncRNA | 0.35 | 2 | 28098477 | 28099570 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| adss2 | LOC106589688 | coding | upstream | 129155 | 27943767 ~ 27969322 (+) |
| lhb | LOC100135809 | coding | upstream | 231965 | 27864868 ~ 27866512 (+) |
| arfgef3 | arfgef3 | coding | upstream | 240382 | 27814389 ~ 27858095 (+) |
| LOC100136337 | tnfaip3 | coding | upstream | 311958 | 27770742 ~ 27786519 (+) |
| LOC110499283 | LOC106589675 | coding | upstream | 414570 | 27676593 ~ 27683907 (+) |
| cep170aa | cep170 | coding | downstream | 126340 | 28225910 ~ 28293688 (+) |
| abcg8 | abcg8 | coding | downstream | 216919 | 28316489 ~ 28331818 (+) |
| ppm1ba | ppm1b | coding | downstream | 379230 | 28478800 ~ 28525093 (+) |
| slc3a1 | slc3a1 | coding | downstream | 425899 | 28525469 ~ 28534588 (+) |
| camkmt | camkmt | coding | downstream | 448923 | 28548493 ~ 28745581 (+) |
| G1680826 | NA | non-coding | upstream | 71660 | 28026511 ~ 28026817 (+) |
| G1680704 | NA | non-coding | upstream | 106421 | 27991571 ~ 27992056 (+) |
| G1680780 | NA | non-coding | upstream | 160780 | 27937194 ~ 27937697 (+) |
| G1680722 | perp | non-coding | upstream | 289551 | 27805494 ~ 27808926 (+) |
| G1680714 | NA | non-coding | upstream | 300079 | 27798003 ~ 27798398 (+) |
| G1680964 | NA | non-coding | downstream | 155646 | 28255216 ~ 28255554 (+) |
| G1680968 | NA | non-coding | downstream | 161525 | 28261095 ~ 28261302 (+) |
| G1680969 | NA | non-coding | downstream | 162267 | 28261837 ~ 28262116 (+) |
| G1680975 | NA | non-coding | downstream | 176536 | 28276106 ~ 28276823 (+) |
| G1680230 | NA | other | upstream | 722658 | 27375354 ~ 27375819 (+) |
| G1679823 | NA | other | upstream | 1011014 | 27084426 ~ 27087463 (+) |
| G1679135 | NA | other | upstream | 1322797 | 26700392 ~ 26775680 (+) |
| LOC110499259 | LOC106589644 | other | upstream | 1442366 | 26654584 ~ 26656111 (+) |
| LOC110499256 | LOC106589642 | other | upstream | 1465279 | 26632095 ~ 26639269 (+) |
| G1681180 | NA | other | downstream | 617791 | 28717361 ~ 28726495 (+) |
| G1681792 | NA | other | downstream | 678436 | 28778006 ~ 28778409 (+) |
| lhcgr | lhr | other | downstream | 1357658 | 29437357 ~ 29458499 (+) |
| LOC110499316 | LOC106589729 | other | downstream | 1472865 | 29572397 ~ 29588171 (+) |
| G1686317 | LOC106589755 | other | downstream | 4554784 | 32654354 ~ 32661648 (+) |
