Gene
RNA
| Item | Value |
|---|---|
| gene id | G1681162 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048584.1 |
| NCBI id | CM023238.2 |
| chromosome length | 46616863 |
| location | 28688692 ~ 28729427 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1923100 | True | 621 | lncRNA | 0.50 | 2 | 28688692 | 28729427 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| slc3a1 | slc3a1 | coding | upstream | 154104 | 28525469 ~ 28534588 (+) |
| ppm1ba | ppm1b | coding | upstream | 163599 | 28478800 ~ 28525093 (+) |
| abcg8 | abcg8 | coding | upstream | 356874 | 28316489 ~ 28331818 (+) |
| cep170aa | cep170 | coding | upstream | 395004 | 28225910 ~ 28293688 (+) |
| akt3a | LOC106589689 | coding | upstream | 518920 | 28027289 ~ 28169772 (+) |
| six3a | six3 | coding | downstream | 119624 | 28849051 ~ 28852328 (+) |
| LOC110499307 | NA | coding | downstream | 162751 | 28892178 ~ 28936652 (+) |
| LOC110499309 | prkce | coding | downstream | 398312 | 29127739 ~ 29280630 (+) |
| LOC110499310 | epas1 | coding | downstream | 556458 | 29285885 ~ 29356101 (+) |
| trnaa-ugc-146 | NA | coding | downstream | 660893 | 29390320 ~ 29390393 (+) |
| G1681137 | NA | non-coding | upstream | 50690 | 28637616 ~ 28638002 (+) |
| G1681090 | NA | non-coding | upstream | 144109 | 28537824 ~ 28544583 (+) |
| G1681066 | NA | non-coding | upstream | 213446 | 28474929 ~ 28475246 (+) |
| G1681062 | NA | non-coding | upstream | 217719 | 28470475 ~ 28470973 (+) |
| G1681035 | NA | non-coding | upstream | 218243 | 28469161 ~ 28470449 (+) |
| G1681791 | NA | non-coding | downstream | 47944 | 28777371 ~ 28777600 (+) |
| G1681797 | NA | non-coding | downstream | 54847 | 28784274 ~ 28784491 (+) |
| G1681820 | NA | non-coding | downstream | 79320 | 28808747 ~ 28809006 (+) |
| G1681835 | NA | non-coding | downstream | 99254 | 28828681 ~ 28828880 (+) |
| G1681846 | NA | non-coding | downstream | 105490 | 28834917 ~ 28835235 (+) |
| G1680230 | NA | other | upstream | 1312873 | 27375354 ~ 27375819 (+) |
| G1679823 | NA | other | upstream | 1601229 | 27084426 ~ 27087463 (+) |
| G1679135 | NA | other | upstream | 1913012 | 26700392 ~ 26775680 (+) |
| LOC110499259 | LOC106589644 | other | upstream | 2032581 | 26654584 ~ 26656111 (+) |
| LOC110499256 | LOC106589642 | other | upstream | 2055494 | 26632095 ~ 26639269 (+) |
| G1681792 | NA | other | downstream | 48579 | 28778006 ~ 28778409 (+) |
| lhcgr | lhr | other | downstream | 727801 | 29437357 ~ 29458499 (+) |
| LOC110499316 | LOC106589729 | other | downstream | 843008 | 29572397 ~ 29588171 (+) |
| G1686317 | LOC106589755 | other | downstream | 3924927 | 32654354 ~ 32661648 (+) |
| LOC118942060 | LOC106589768 | other | downstream | 4447866 | 33177293 ~ 33196167 (+) |
