G1681870


Basic Information

Item Value
gene id G1681870
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 28855561 ~ 28855833 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1923868
GAAAAAGGTAAGACGTCGGACAAACAGTTAGTAGACTATATTCTTATTTGTGGAGAAAGCTACCGGCCTACTGCACCATACTAACATCATTTTAGAGAGGTAACTAATTGAcaggattgttttttttttttttttttttacaatttacgGTGTAGGTCTGTCTATTCAATTGCAATTTGGAAACTACAGGTGgatatataattttttatttgaGGAATTCCAGGCATATGTTGGATTTCAAAGGATCATATGAGAAAAGGTAGGAAGGCGGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1923868 True 273 lncRNA 0.34 1 28855561 28855833

Neighbor

gene id symbol gene type direction distance location
six3a six3 coding upstream 3233 28849051 ~ 28852328 (+)
camkmt camkmt coding upstream 109980 28548493 ~ 28745581 (+)
slc3a1 slc3a1 coding upstream 320973 28525469 ~ 28534588 (+)
ppm1ba ppm1b coding upstream 330468 28478800 ~ 28525093 (+)
abcg8 abcg8 coding upstream 523743 28316489 ~ 28331818 (+)
LOC110499307 NA coding downstream 36345 28892178 ~ 28936652 (+)
LOC110499309 prkce coding downstream 271906 29127739 ~ 29280630 (+)
LOC110499310 epas1 coding downstream 430052 29285885 ~ 29356101 (+)
trnaa-ugc-146 NA coding downstream 534487 29390320 ~ 29390393 (+)
ankrd1a LOC106589708 coding downstream 567861 29423694 ~ 29428859 (+)
G1681846 NA non-coding upstream 20326 28834917 ~ 28835235 (+)
G1681835 NA non-coding upstream 26681 28828681 ~ 28828880 (+)
G1681820 NA non-coding upstream 46555 28808747 ~ 28809006 (+)
G1681797 NA non-coding upstream 71070 28784274 ~ 28784491 (+)
G1681791 NA non-coding upstream 77961 28777371 ~ 28777600 (+)
G1681897 NA non-coding downstream 19992 28875825 ~ 28876052 (+)
G1681914 NA non-coding downstream 28839 28884672 ~ 28884968 (+)
G1682002 NA non-coding downstream 95437 28951270 ~ 28951508 (+)
G1682005 NA non-coding downstream 97498 28953331 ~ 28953537 (+)
G1682008 NA non-coding downstream 100694 28956527 ~ 28956746 (+)
G1681792 NA other upstream 77152 28778006 ~ 28778409 (+)
G1681180 NA other upstream 129066 28717361 ~ 28726495 (+)
G1680230 NA other upstream 1479742 27375354 ~ 27375819 (+)
G1679823 NA other upstream 1768098 27084426 ~ 27087463 (+)
G1679135 NA other upstream 2079881 26700392 ~ 26775680 (+)
lhcgr lhr other downstream 601395 29437357 ~ 29458499 (+)
LOC110499316 LOC106589729 other downstream 716602 29572397 ~ 29588171 (+)
G1686317 LOC106589755 other downstream 3798521 32654354 ~ 32661648 (+)
LOC118942060 LOC106589768 other downstream 4321460 33177293 ~ 33196167 (+)
G1687675 NA other downstream 5470004 34325837 ~ 34326254 (+)

Expression


Co-expression Network