G1682122


Basic Information

Item Value
gene id G1682122
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 29114854 ~ 29115245 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1924141
ACTGCTGTGACTCCGCTGCGTCACAGATGGAGTTAGTCTGATTGGCTCCTCCAGCCTCTTCCTCTAACAGAGCTTGCTGCTTTTTACCTCCTTTTGTTGCTCTGGGAGCTTTAGGGGGTTTGGGTTCTTTAGGGGGTTTGGGAGGTTTAGGGGCTTTAGGGGCTCTGGGAGCTTTAGGGGCTCTGGGAGCTCGGGGCTTCCTCTCCACTGGTTTGCGTGGGACTTTGGGTTTGGATTCCTTGGGCTCTTTAGGTTTAGCCTGCCTCTTCACCGCTGGTTTCTTCTCGCTTGGCTGAGCTTTCTGCTGCCTCTTGGGGGCCTTGGATTCTGGCTGCCATTCTTCAGTCTCATCTTCACTCGCTGAC

Function

NR:

description
S1 RNA-binding domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1924141 True 365 lncRNA 0.55 2 29114854 29115245

Neighbor

gene id symbol gene type direction distance location
LOC110499307 NA coding upstream 178202 28892178 ~ 28936652 (+)
six3a six3 coding upstream 262526 28849051 ~ 28852328 (+)
camkmt camkmt coding upstream 369273 28548493 ~ 28745581 (+)
slc3a1 slc3a1 coding upstream 580266 28525469 ~ 28534588 (+)
ppm1ba ppm1b coding upstream 589761 28478800 ~ 28525093 (+)
LOC110499309 prkce coding downstream 12494 29127739 ~ 29280630 (+)
LOC110499310 epas1 coding downstream 170640 29285885 ~ 29356101 (+)
trnaa-ugc-146 NA coding downstream 275075 29390320 ~ 29390393 (+)
ankrd1a LOC106589708 coding downstream 308449 29423694 ~ 29428859 (+)
lhcgr lhr coding downstream 322112 29437357 ~ 29458499 (+)
G1682118 NA non-coding upstream 3601 29110719 ~ 29111253 (+)
G1682072 NA non-coding upstream 63962 29047310 ~ 29050892 (+)
G1682067 srbd1 non-coding upstream 71112 29042149 ~ 29043742 (+)
G1682008 NA non-coding upstream 158108 28956527 ~ 28956746 (+)
G1682005 NA non-coding upstream 161317 28953331 ~ 28953537 (+)
G1682128 NA non-coding downstream 6600 29121845 ~ 29122528 (+)
G1682164 NA non-coding downstream 71536 29186781 ~ 29188592 (+)
G1682169 NA non-coding downstream 81407 29196652 ~ 29197180 (+)
G1682426 NA non-coding downstream 245488 29360733 ~ 29361016 (+)
G1682427 NA non-coding downstream 247591 29362836 ~ 29363209 (+)
G1681792 NA other upstream 336445 28778006 ~ 28778409 (+)
G1681180 NA other upstream 388359 28717361 ~ 28726495 (+)
G1680230 NA other upstream 1739035 27375354 ~ 27375819 (+)
G1679823 NA other upstream 2027391 27084426 ~ 27087463 (+)
G1679135 NA other upstream 2339174 26700392 ~ 26775680 (+)
LOC110499316 LOC106589729 other downstream 457190 29572397 ~ 29588171 (+)
G1686317 LOC106589755 other downstream 3539109 32654354 ~ 32661648 (+)
LOC118942060 LOC106589768 other downstream 4062048 33177293 ~ 33196167 (+)
G1687675 NA other downstream 5210592 34325837 ~ 34326254 (+)

Expression


Co-expression Network