G1683057


Basic Information

Item Value
gene id G1683057
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 29357762 ~ 29358751 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1925203
TAAGATCAGTACGCTTTAATAAGATATCAGTGCAGAAATACGTCTTCTTATTGGGTTCAGTTCCCCATACAgtaataacaaaaataataacaatataataatgtcAATATGAATTCAATATAAATCATAGGATCATCtaaaacagtggttcccaaccaggggtactaggactcctgggggtacttggcctatccacagggttactggtaaaatgcacatgagacCATAGggttactggtaaaatgcacatgagacCATAGggttactggtaaaatgcacatgagacCATAGggttactggtaaaatgcacatgagacCATAGggttactggtaaaatgcacatgagacCATAGggttactggtaaaatgcacatgagacCATAGGGTTACTGGTAAAATGCGCATGAGACCATAGggttactggtaaaatgcacatgagacCATAGGGTTACTGGtcaaatgcacatgagggggtacttcagtgTTACTCCGGGCAGAGCAGTTGGTGGTACGGTAACCAAAAAAGGTTGGAAACCACTGATCTAAAATAACTATAAGACATCCACAAATGTAATGGATAAAAGCAGAACATATCCCAAGGAAAAAACAACCCTCATTATATTTAGTAGCCTAGAATGCTGATATTGTCTTTAAAGAGGACGAGAACTGAGATTGTTCAATTATTCATATTTGTATGTTTACTTTTTGGGCCCTTCAAGTGTCACAGTAGCTACAGCTAGGACTGGTGGATAGCCTTCCTTCTGCAATTACCATTTTGGGACTTCCCTCTAGCCTACTCATTTCACATACAGGAGCCCAATTTAGGCCACACCCCATCTGCAGTTCCATCTGACATCCCAGCCTCCTCTCCGTCAGGAACAGGAGCGGGGCCAGCCTCCTCTCTGTCAGGAACAGGAGCGTGGCCAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1925203 True 928 lncRNA 0.43 2 29357762 29358751

Neighbor

gene id symbol gene type direction distance location
srbd1 srbd1 coding downstream 234070 29026199 ~ 29123692 (-)
LOC118941999 NA coding downstream 411023 28941146 ~ 28946739 (-)
six2a six2 coding downstream 466177 28888248 ~ 28891585 (-)
prepl prepl coding downstream 809353 28536167 ~ 28548409 (-)
lrpprc lrpprc coding downstream 951100 28333865 ~ 28406662 (-)
LOC110499311 LOC106589723 coding upstream 37033 29395784 ~ 29404585 (-)
LOC110499315 LOC106589727 coding upstream 182588 29541315 ~ 29571033 (-)
LOC110499317 LOC106589730 coding upstream 228812 29587563 ~ 29600822 (-)
itga9 LOC106589731 coding upstream 247955 29606706 ~ 29746328 (-)
golga4 golga4 coding upstream 388474 29747225 ~ 29801837 (-)
G1682380 NA non-coding downstream 89680 29234778 ~ 29268082 (-)
G1682389 NA non-coding downstream 110452 29246812 ~ 29247310 (-)
G1682373 NA non-coding downstream 134716 29221380 ~ 29223046 (-)
G1682320 NA non-coding downstream 246509 29110669 ~ 29111253 (-)
G1682296 NA non-coding downstream 277043 29080233 ~ 29080719 (-)
G1683096 NA non-coding upstream 1891 29360642 ~ 29360869 (-)
G1683097 NA non-coding upstream 2174 29360925 ~ 29361157 (-)
G1683112 NA non-coding upstream 20752 29379503 ~ 29379771 (-)
G1683165 NA non-coding upstream 105446 29464197 ~ 29464731 (-)
G1683175 NA non-coding upstream 118589 29477340 ~ 29478249 (-)
G1681658 NA other downstream 821953 28535295 ~ 28535809 (-)
G1681623 NA other downstream 883737 28473285 ~ 28474025 (-)
fa36a fa36a other downstream 1492934 27860741 ~ 27864828 (-)
LOC110499285 olig3 other downstream 1607332 27748849 ~ 27750461 (-)
sf3b5 sf3b5 other downstream 1973154 27381985 ~ 27384608 (-)
G1684661 NA other upstream 1752804 31111555 ~ 31113686 (-)
G1684920 NA other upstream 2048843 31407594 ~ 31412844 (-)
LOC110499342 LOC106589762 other upstream 3452956 32810995 ~ 32812999 (-)
G1686887 NA other upstream 3719059 33077810 ~ 33078027 (-)

Expression


Co-expression Network