G1682440


Basic Information

Item Value
gene id G1682440
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 29382396 ~ 29382601 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1924520
TAATGAGGGATGAAATTCCAAATTGAAGTTGGATtctttaagaaatgttttgccCAATTTATCTTGAAAGTATCATTCAAAGTAGGAAAATCAAAAAAATTGAGACCACCATATTCATGTGTGTTCATAACGATTTCCTAATATAATGTGTACAATTTTTCCAGAtgaagttgaaaagcatctggtcaaCACCTTTACCTATTTTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1924520 True 206 lncRNA 0.31 1 29382396 29382601

Neighbor

gene id symbol gene type direction distance location
LOC110499310 epas1 coding upstream 26295 29285885 ~ 29356101 (+)
LOC110499309 prkce coding upstream 101766 29127739 ~ 29280630 (+)
LOC110499307 NA coding upstream 445744 28892178 ~ 28936652 (+)
six3a six3 coding upstream 530068 28849051 ~ 28852328 (+)
camkmt camkmt coding upstream 636815 28548493 ~ 28745581 (+)
trnaa-ugc-146 NA coding downstream 7719 29390320 ~ 29390393 (+)
ankrd1a LOC106589708 coding downstream 41093 29423694 ~ 29428859 (+)
lhcgr lhr coding downstream 54756 29437357 ~ 29458499 (+)
mertka LOC106589725 coding downstream 87430 29470031 ~ 29508296 (+)
tmem87b LOC106589726 coding downstream 128260 29510861 ~ 29536419 (+)
G1682427 NA non-coding upstream 19187 29362836 ~ 29363209 (+)
G1682426 NA non-coding upstream 21380 29360733 ~ 29361016 (+)
G1682169 NA non-coding upstream 185216 29196652 ~ 29197180 (+)
G1682164 NA non-coding upstream 193804 29186781 ~ 29188592 (+)
G1682128 NA non-coding upstream 259868 29121845 ~ 29122528 (+)
G1682418 NA non-coding downstream 13214 29395815 ~ 29396294 (+)
G1682489 LOC106589727 non-coding downstream 158751 29541352 ~ 29543464 (+)
G1682544 NA non-coding downstream 207249 29589850 ~ 29590169 (+)
G1682545 NA non-coding downstream 207732 29590333 ~ 29590539 (+)
G1682546 LOC106589730 non-coding downstream 208591 29591192 ~ 29591591 (+)
G1681792 NA other upstream 603987 28778006 ~ 28778409 (+)
G1681180 NA other upstream 655901 28717361 ~ 28726495 (+)
G1680230 NA other upstream 2006577 27375354 ~ 27375819 (+)
G1679823 NA other upstream 2294933 27084426 ~ 27087463 (+)
G1679135 NA other upstream 2606716 26700392 ~ 26775680 (+)
LOC110499316 LOC106589729 other downstream 189834 29572397 ~ 29588171 (+)
G1686317 LOC106589755 other downstream 3271753 32654354 ~ 32661648 (+)
LOC118942060 LOC106589768 other downstream 3794692 33177293 ~ 33196167 (+)
G1687675 NA other downstream 4943236 34325837 ~ 34326254 (+)

Expression


Co-expression Network