G1683175


Basic Information

Item Value
gene id G1683175
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 29477340 ~ 29478249 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1925335
ATAGAGCCAATGTTATGTTTTCACATTGAAGACAGGTTTTTGTCTGTGGGAGAACCTAATGGAGGCAGGTAACAAGTTTTATGCTCACAACACTGCTCAGCTTCAAGATATGTATTACTAATTAATCATTAAGGCCCCTTTAGGTGTTCTAGAGCGTTTCAAAGGTGCAGTCCCCACTCTGTCAGTCCAGGATTCAAATTATAACTAATTTAGCAAATCTTCAGGCCAAAATGTTGTAGCCCTACTCAGTCTTgaccagtggtgggaaaagtacccaattgtcatacttgagtaaaagtaaagataccttcagaGAAAATGACACCCGGTaattctacagacagacagtgacagacagtgacagacagtgacagacagacagacagacagacagacagacagacattgttaAAGCATGAGTGGAACGAATTGCAagaaatctctgaagttggagacttttatctccctcaccaactttaaacatctgctacaTAGTCCattggtatatagcccacccaatttacctacctcatccccatactgtttttatttatttacttttctgctcttttgcacaccaatatctctacctgtacatgaacatctgatcatttatcactccagtgttaatctgctaaattgtaattattcactcctatggcctatttattgcctacctcctcatgccttttgcacacaatgtatatagattcttttttttctactatgttattgacttgtttattgtttactccatgtgtaactctgtgttgttgtctgttcatactgctatgctttatcttggccagg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1925335 True 810 lncRNA 0.39 2 29477340 29478249

Neighbor

gene id symbol gene type direction distance location
LOC110499311 LOC106589723 coding downstream 72755 29395784 ~ 29404585 (-)
srbd1 srbd1 coding downstream 353648 29026199 ~ 29123692 (-)
LOC118941999 NA coding downstream 530601 28941146 ~ 28946739 (-)
six2a six2 coding downstream 585755 28888248 ~ 28891585 (-)
prepl prepl coding downstream 928931 28536167 ~ 28548409 (-)
LOC110499315 LOC106589727 coding upstream 63090 29541315 ~ 29571033 (-)
LOC110499317 LOC106589730 coding upstream 109314 29587563 ~ 29600822 (-)
itga9 LOC106589731 coding upstream 128457 29606706 ~ 29746328 (-)
golga4 golga4 coding upstream 268976 29747225 ~ 29801837 (-)
fbxo11a fbxo11 coding upstream 581877 30060126 ~ 30093714 (-)
G1683165 NA non-coding downstream 12609 29464197 ~ 29464731 (-)
G1683112 NA non-coding downstream 97569 29379503 ~ 29379771 (-)
G1683097 NA non-coding downstream 116183 29360925 ~ 29361157 (-)
G1683096 NA non-coding downstream 116471 29360642 ~ 29360869 (-)
G1683057 NA non-coding downstream 118589 29357762 ~ 29358751 (-)
G1683188 LOC106589725 non-coding upstream 28283 29506532 ~ 29508261 (-)
G1683225 NA non-coding upstream 55403 29533652 ~ 29536389 (-)
G1683251 NA non-coding upstream 120493 29598742 ~ 29599028 (-)
G1683252 NA non-coding upstream 120894 29599143 ~ 29599406 (-)
G1683269 NA non-coding upstream 229915 29708164 ~ 29708616 (-)
G1681658 NA other downstream 941531 28535295 ~ 28535809 (-)
G1681623 NA other downstream 1003315 28473285 ~ 28474025 (-)
fa36a fa36a other downstream 1612512 27860741 ~ 27864828 (-)
LOC110499285 olig3 other downstream 1726910 27748849 ~ 27750461 (-)
sf3b5 sf3b5 other downstream 2092732 27381985 ~ 27384608 (-)
G1684661 NA other upstream 1633306 31111555 ~ 31113686 (-)
G1684920 NA other upstream 1929345 31407594 ~ 31412844 (-)
LOC110499342 LOC106589762 other upstream 3333458 32810995 ~ 32812999 (-)
G1686887 NA other upstream 3599561 33077810 ~ 33078027 (-)

Expression


Co-expression Network