G1683188 (LOC106589725)


Basic Information

Item Value
gene id G1683188
gene name LOC106589725
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 29506532 ~ 29508261 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1925364
GCAAATCTCTTTAACAATTCAGTCAATATCAACATTGACTATATTTATATTTAACAAAAGTTGAACTTCTATTAAAATCTGTAAAATAAACTATTAGATATTGTGGACATTCCAGGGTCCACTGCCTAACCTTGGTGGAGTACCTCAAGGCTGTATACAAGGTCCTCTGAGATACAAAATaactgtttgtttttttcttcagTCCATCGATATCATATGTACACAATACTCTATATACACATATCATGTAAAGTTCCTATACACATTGCCACTTCAAAAATACTTCAATATATAAAAGGAATTCTTAAAATTACGTACAGTTTAAATGCTTTAGATGGCCTCTGATTGTAATGGGAGTGTACTACTTACTTACAACAGTGGTTGGCTGTAATTGTGCCTTGTTCACAGCTTTCAATATCTGCTAGGGATACACTGACTTCAATTTTTAGCAGAGCTTATTTAATTGGAAATATACTATAAGAGAGATGTGCAAATGTAGCATCTCTTATGTACATCTCTTGCATTAACACTGATAGCTAGTGGTAACCGTTTGAGGTATAAACATCCACTGGAAAACTGGTCATAATTATTTCAATGCAAAGCATTGGGGAATAGACAAGGTAATAACACTTAATAATGCCACAAGACAGGATCATAGAAATAGGGATTATATTTCTACAGACACTGGGCAGATCCTTGGTGAAACAACTTGGAAGTGTTGCAACGTGAGACTACACATGCTGCACCAAGCAGAAGGCCTATGTGCTCATGATCCACACAGTACCATACGTTcaaactggggcggcagggtagcctagtggttagagcgttgggctagtaactggaaggttgcaagttcaaatccccgagctgacaaggtaccaatctgtcgttctgcccccactgttcctaggccgttaactgacttgcctagttaaataaaggtacaatttttTTCCCTTTAAATAAGGGAGTAGCACGAGATTCCAAGGCGTGATTTGCACCCAGTCTCATAGGGTCCAGATCCAGAAACGTTACCGCTGCTCCATGAGTGGTCATCATGCTTATCAACGGCAGGGTCTTTACAATACCTATATTATGTCCTCAACAGTCCAGAGTGCAGACAAGAAGGATGTGTATTATCATCAGACATGACCGCTGGGGGAGAGCGCTTCTTTGTCTGGTTTCAGATTACTGGATTTCTAGTCCCAACGTTCCATGCCTATCAGAGCAACAGCGTTGTGTCACTCGCGTGCTGATCCATCCCAGTGACATCACCCACTGAGTCACGAGTAGCTCCCCCCAAAACCCCACCCAAGCCCTCCCGAGCCAACAGGGGAGTGTCACTGTCCACAGCTGCTGTTGTCATGGTGACAGCGGGGTCCCCACTCCTATTGGCATTAGAGATGACAACAACGTAAcgatcatcttcctcctccttttcctccataGTCTCGTGGATGACTGCTGTTACCAGATCTCGGTTGTCTCGTCTCTGGCGACTGTTACTGCAGGACGGAGAAGCGCTGAACTGGTCGCTACAGGAAGGGGAGGGGCTGAATTCATTTCTATGACTGCAGGACGGGGAGGAGCTAAAAAGCGGCAAATCCAGGTGGGAGTCTGCACAAGCACCGGGCTGATCCTCCTCAGGGAAactggtgttgatgtagatgatGTCCTCTTTGCTGGTAGAAGCCTCCGGAAGTTTCT

Function

NR:

description
tyrosine-protein kinase Mer-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1925364 True 1710 lncRNA 0.44 2 29506532 29508261

Neighbor

gene id symbol gene type direction distance location
LOC110499311 LOC106589723 coding downstream 101947 29395784 ~ 29404585 (-)
srbd1 srbd1 coding downstream 382840 29026199 ~ 29123692 (-)
LOC118941999 NA coding downstream 559793 28941146 ~ 28946739 (-)
six2a six2 coding downstream 614947 28888248 ~ 28891585 (-)
prepl prepl coding downstream 958123 28536167 ~ 28548409 (-)
LOC110499315 LOC106589727 coding upstream 33078 29541315 ~ 29571033 (-)
LOC110499317 LOC106589730 coding upstream 79302 29587563 ~ 29600822 (-)
itga9 LOC106589731 coding upstream 98445 29606706 ~ 29746328 (-)
golga4 golga4 coding upstream 238964 29747225 ~ 29801837 (-)
fbxo11a fbxo11 coding upstream 551865 30060126 ~ 30093714 (-)
G1683175 NA non-coding downstream 28283 29477340 ~ 29478249 (-)
G1683165 NA non-coding downstream 41801 29464197 ~ 29464731 (-)
G1683112 NA non-coding downstream 126761 29379503 ~ 29379771 (-)
G1683097 NA non-coding downstream 145375 29360925 ~ 29361157 (-)
G1683096 NA non-coding downstream 145663 29360642 ~ 29360869 (-)
G1683225 NA non-coding upstream 25391 29533652 ~ 29536389 (-)
G1683251 NA non-coding upstream 90481 29598742 ~ 29599028 (-)
G1683252 NA non-coding upstream 90882 29599143 ~ 29599406 (-)
G1683269 NA non-coding upstream 199903 29708164 ~ 29708616 (-)
G1683407 NA non-coding upstream 449789 29958050 ~ 29961061 (-)
G1681658 NA other downstream 970723 28535295 ~ 28535809 (-)
G1681623 NA other downstream 1032507 28473285 ~ 28474025 (-)
fa36a fa36a other downstream 1641704 27860741 ~ 27864828 (-)
LOC110499285 olig3 other downstream 1756102 27748849 ~ 27750461 (-)
sf3b5 sf3b5 other downstream 2121924 27381985 ~ 27384608 (-)
G1684661 NA other upstream 1603294 31111555 ~ 31113686 (-)
G1684920 NA other upstream 1899333 31407594 ~ 31412844 (-)
LOC110499342 LOC106589762 other upstream 3303446 32810995 ~ 32812999 (-)
G1686887 NA other upstream 3569549 33077810 ~ 33078027 (-)

Expression


Co-expression Network