G1682560


Basic Information

Item Value
gene id G1682560
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 29614379 ~ 29614578 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1924665
TAACAACGTTGAACAAATGTCTACGCCTACGGGTACTAAAACTTAAGGAACCATTTAAGGCGAGTCTTCTATTGCTGAGCTTTATAACTCATACATTATTTTGTTCTCCCATCATTTACCAGGACCTGTTTGCATGGCATGGGTGATAAACTAAATCTTGTCAGCTGTTGATAAGTAGCAGGCTTGCTGGGAAAAGGGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1924665 True 200 lncRNA 0.41 1 29614379 29614578

Neighbor

gene id symbol gene type direction distance location
LOC110499316 LOC106589729 coding upstream 26208 29572397 ~ 29588171 (+)
tmem87b LOC106589726 coding upstream 77960 29510861 ~ 29536419 (+)
mertka LOC106589725 coding upstream 106083 29470031 ~ 29508296 (+)
lhcgr lhr coding upstream 155880 29437357 ~ 29458499 (+)
ankrd1a LOC106589708 coding upstream 185520 29423694 ~ 29428859 (+)
msh6 msh6 coding downstream 411047 30025625 ~ 30060187 (+)
LOC110499323 ppp1r21 coding downstream 579691 30194269 ~ 30217647 (+)
LOC110499324 LOC106589740 coding downstream 605208 30219786 ~ 30241466 (+)
LOC118942000 NA coding downstream 1825699 31440277 ~ 31440996 (+)
LOC110499596 NA coding downstream 1880516 31495094 ~ 31511177 (+)
G1682549 NA non-coding upstream 5793 29603733 ~ 29608586 (+)
G1682556 NA non-coding upstream 12426 29601727 ~ 29601953 (+)
G1682554 NA non-coding upstream 13428 29600704 ~ 29600951 (+)
G1682553 NA non-coding upstream 13783 29600395 ~ 29600596 (+)
G1682546 LOC106589730 non-coding upstream 22788 29591192 ~ 29591591 (+)
G1682566 NA non-coding downstream 13337 29627915 ~ 29628186 (+)
G1682568 NA non-coding downstream 15749 29630327 ~ 29630627 (+)
G1682569 NA non-coding downstream 16364 29630942 ~ 29631154 (+)
G1682671 NA non-coding downstream 163049 29777627 ~ 29778080 (+)
G1682761 NA non-coding downstream 292295 29906873 ~ 29907283 (+)
G1681792 NA other upstream 835970 28778006 ~ 28778409 (+)
G1681180 NA other upstream 887884 28717361 ~ 28726495 (+)
G1680230 NA other upstream 2238560 27375354 ~ 27375819 (+)
G1686317 LOC106589755 other downstream 3039776 32654354 ~ 32661648 (+)
LOC118942060 LOC106589768 other downstream 3562715 33177293 ~ 33196167 (+)
G1687675 NA other downstream 4711259 34325837 ~ 34326254 (+)
LOC110499396 LOC106589821 other downstream 5767131 35381609 ~ 35384567 (+)
G1689347 NA other downstream 6066789 35681367 ~ 35682437 (+)

Expression


Co-expression Network