G1682915


Basic Information

Item Value
gene id G1682915
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 30201261 ~ 30212674 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1925048
gttgtcctgttggaaggtgaacctttgccccagtctgaggtcctgagtgctctggagcaggtttgcatcaaggatctctgtactttgcctcaatcctgactagtctcccagtccctgccgctgaaaaacaatcccacagcatgatgctgccaccaccatgcttcaccgtagggatgggactttctcatggtctgagagtctctaggtgccttttggcaaattccaagcgggctgtcatgtgcctttttactgaggagtggctttcgtctggacactctaccataaaggcctgattggtggagtgctgcag

Function

NR:

description
TC1-like transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1925048 True 310 lncRNA 0.52 2 30201261 30212674

Neighbor

gene id symbol gene type direction distance location
msh6 msh6 coding upstream 141074 30025625 ~ 30060187 (+)
LOC110499316 LOC106589729 coding upstream 613090 29572397 ~ 29588171 (+)
tmem87b LOC106589726 coding upstream 664842 29510861 ~ 29536419 (+)
mertka LOC106589725 coding upstream 692965 29470031 ~ 29508296 (+)
lhcgr lhr coding upstream 742762 29437357 ~ 29458499 (+)
LOC110499324 LOC106589740 coding downstream 7112 30219786 ~ 30241466 (+)
LOC118942000 NA coding downstream 1227603 31440277 ~ 31440996 (+)
LOC110499596 NA coding downstream 1282420 31495094 ~ 31511177 (+)
erlec1 LOC106589745 coding downstream 1501032 31713706 ~ 31725878 (+)
wdr27 wdr27 coding downstream 1610086 31822760 ~ 31978074 (+)
G1682751 NA non-coding upstream 68375 30108711 ~ 30132886 (+)
G1682759 NA non-coding upstream 212340 29988103 ~ 29988921 (+)
G1682761 NA non-coding upstream 293978 29906873 ~ 29907283 (+)
G1682671 NA non-coding upstream 423181 29777627 ~ 29778080 (+)
G1682569 NA non-coding upstream 570107 29630942 ~ 29631154 (+)
G1683718 NA non-coding downstream 252258 30464932 ~ 30465276 (+)
G1683787 NA non-coding downstream 299361 30512035 ~ 30512248 (+)
G1683800 NA non-coding downstream 311722 30524396 ~ 30524636 (+)
G1683802 NA non-coding downstream 312482 30525156 ~ 30525418 (+)
G1683804 NA non-coding downstream 312784 30525458 ~ 30525751 (+)
G1681792 NA other upstream 1422852 28778006 ~ 28778409 (+)
G1681180 NA other upstream 1474766 28717361 ~ 28726495 (+)
G1680230 NA other upstream 2825442 27375354 ~ 27375819 (+)
G1686317 LOC106589755 other downstream 2441680 32654354 ~ 32661648 (+)
LOC118942060 LOC106589768 other downstream 2964619 33177293 ~ 33196167 (+)
G1687675 NA other downstream 4113163 34325837 ~ 34326254 (+)
LOC110499396 LOC106589821 other downstream 5169035 35381609 ~ 35384567 (+)
G1689347 NA other downstream 5468693 35681367 ~ 35682437 (+)

Expression


Co-expression Network