G1683805


Basic Information

Item Value
gene id G1683805
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 30526443 ~ 30526763 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1926028
cttccagttctctgctgcctgtgactggaacgaattgcaaaaatcgttgaagttggagacttttatctccctcaccaactttaaacatctgctatctgagcagctaaccgatcgctgcagctgtacatagtccattgataaatagcccacccaatttacctacctcatccccatactgttttatttatttacttttctgctcttttgcacaccagtatctctacctgcacatgaccatctgatcatttatcactccagtgttaatctgctaaattgtaattattcgcctacctcctcatgccttttgcacacaatgtatat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1926028 True 321 lncRNA 0.41 1 30526443 30526763

Neighbor

gene id symbol gene type direction distance location
LOC110499324 LOC106589740 coding upstream 284977 30219786 ~ 30241466 (+)
LOC110499323 ppp1r21 coding upstream 308796 30194269 ~ 30217647 (+)
msh6 msh6 coding upstream 466256 30025625 ~ 30060187 (+)
LOC110499316 LOC106589729 coding upstream 938272 29572397 ~ 29588171 (+)
tmem87b LOC106589726 coding upstream 990024 29510861 ~ 29536419 (+)
LOC118942000 NA coding downstream 913514 31440277 ~ 31440996 (+)
LOC110499596 NA coding downstream 968331 31495094 ~ 31511177 (+)
erlec1 LOC106589745 coding downstream 1186943 31713706 ~ 31725878 (+)
wdr27 wdr27 coding downstream 1295997 31822760 ~ 31978074 (+)
thbs2a thbs2 coding downstream 1507436 32034199 ~ 32073088 (+)
G1683804 NA non-coding upstream 692 30525458 ~ 30525751 (+)
G1683802 NA non-coding upstream 1025 30525156 ~ 30525418 (+)
G1683800 NA non-coding upstream 1807 30524396 ~ 30524636 (+)
G1683787 NA non-coding upstream 14195 30512035 ~ 30512248 (+)
G1683718 NA non-coding upstream 61167 30464932 ~ 30465276 (+)
G1683825 NA non-coding downstream 11096 30537859 ~ 30538186 (+)
G1683827 NA non-coding downstream 12169 30538932 ~ 30539151 (+)
G1683833 NA non-coding downstream 13883 30540646 ~ 30540958 (+)
G1683850 NA non-coding downstream 26098 30552861 ~ 30553144 (+)
G1683872 NA non-coding downstream 39093 30565856 ~ 30573073 (+)
lhcgr lhr other upstream 1068522 29437357 ~ 29458499 (+)
G1681792 NA other upstream 1748034 28778006 ~ 28778409 (+)
G1681180 NA other upstream 1799948 28717361 ~ 28726495 (+)
G1680230 NA other upstream 3150624 27375354 ~ 27375819 (+)
G1686317 LOC106589755 other downstream 2127591 32654354 ~ 32661648 (+)
LOC118942060 LOC106589768 other downstream 2650530 33177293 ~ 33196167 (+)
G1687675 NA other downstream 3799074 34325837 ~ 34326254 (+)
LOC110499396 LOC106589821 other downstream 4854946 35381609 ~ 35384567 (+)
G1689347 NA other downstream 5154604 35681367 ~ 35682437 (+)

Expression


Co-expression Network