G1684590


Basic Information

Item Value
gene id G1684590
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 30989610 ~ 31044901 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1926923
gtgtctacagggagtagggagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagtaaagagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacaggaagtaaagagacataatgcactgtgtctacagggagtagacagagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagtaaagAGACATAAtacactgtgtctacagggagtaaagagacataatgcactgtgtctacagtgagtagggagacataatgcactgtgtctataGGGAGTAAAGAGACATAATGcgctgtgtctacagggagtagggagacataatgcactgtgtctatagggagtagggagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacggGGAGTAGGGatacataatgcactgtgtctacagggagcagggagacataatgcactgtgtctacagggagtaaagagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtatacagggagtagggagacataatgcactgaGTCTACAGGGAGTAAAcagagacataatgcactgtgtctacagggagtaaagagacataatgcactgtgtctacatggagtagggagacataatgcactgcttctacagggagtagggagagacataatgcactgtgtctacagggagtagacagagacataatgcactgtgtccaCAGGGAGTaaagagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagtagggagggacataatgcactgtgtctacagggagtagggagagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtttacagggagcagggagacataatgcactgtgtctacagggagtaaagagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagtagggagacataatgcactgtctctacagggagtagggagagataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagtaaagATACATAATGCACtatgtctacagggagtagggagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtctatagagagtagggagacataatgcactgtgtctacagggagtaaagagacataatgcactgtgtctacagggagtaaagagacataatgcactgtgtctacagggagtaaagagacataatgcactatgtctacagggagtagggagacacaatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagtagggagagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagaagggggagacataatgcactgtgtctacagggagtagggagagagataatgcactgtgtctacagggagtagggagagatataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagtaaacAGAGACATAATGCActgtgtctacagggagcagggagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagtagggagacatactgcactgtgtctacagggagtaaagagtcataatgcactgtgtccacagggagtagggagagataatgcactgtgtctacagggagtagacagagacataatgcactgtgtctacagggagtagggagagataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagtagggagatacataatgcactgtgtctacagggagtatggagggacataatgcactgtgtctacagggagtagagagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagtagggagacataatgtactgtgtctacagggagtagggagacataatgcactgtGTCTACCTACT
>TU1926914
atgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagtaaagagacataatgcactgtgtctacagggagtagggagagacataatgcactgtgtctacagggagtagggagacaatgcactgtgtctacggggagtagggagacataatgcactgtgtctacagggagtagggagagacataatgcactgtgtctacagggagtagggagacaatgcactgtgtctacagggagtagggagagataatgcactgtgtctacagggagtaaagagacataatgcactgtgtctacagggagtaaagagacataatgcactgtgtctacagggagtagggagagacataatgcactgtgtctacagggagtagggagacacaatgcactgtgtctacagggagtagggagagacaTAATGCaatgtgtctacagggagtaaagagacataatgcactgtgtctacagggagtaaagagacataatgcactgtgtctacagggagtagggagagacataatgcactgtgtatacagggagtaaagagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtccacagggagtagggagacataatgcactgtgtctacagggagtagggagagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagtagggatacataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagtagacagagacataatgcactgtgtctacagggagtagggataCATAATGCAcggtgtctacagggagtagggagaaataatgcactgtgtctacagggagtagacagagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtccacagggagtagggagacataatgcactgtgtctacagggagtagggagagacaTAATgtactgtgtctacagggagtagggagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagtaaagagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacaggaagtaaagagacataatgcactgtgtctacaggaagtaaagagacataatgcactgtgtctacagggagtagacagagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagtaaagAGACATAAtacactgtgtctacagggagtaaagatacataatgcactgtgtctacagtgagtagggagacataatgcgctgtgtctacagggagtagggagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagcagggagacataatgcactgtgtctacagggagtagggagagacataatgcactgtgtctacagggagtagggagacacaatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagtaggtagacataatgcactgtatctacagggagtagggagagacataatgcactgtgtctacagggagtagggagagataATGCAcggtgtctacagggagtagggagagataatgcactgtgtctacagggagtagacagagacataatgcactgtgtctacagggagtagggagagataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagaagggagagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtttACAGGGAGTAgagagacataatgcactgtgtctacagggagtaaagagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagtagggagggacataatgcactgtgtctacagggagtagagagatataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagtaaacAGAGACATAATGCActgtgtctacagggagtagggagacatactgcactgtgtctacagggagtaaagagtcataatgcactgtgtccacagggagtagggagacataatgcactgtgtctacagggagtagggagagataatgcactgtgtctatagggagtagggagacataatgcactgtgtctacagggaggagggagaga
>TU1926926
gagacataatgcactgtgtctacagggagtagggagaaaTAATGCACtttgtctacagggagtagggagacataatgcactgtgtctacagggagcagggagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagtagggagacatactgcactgtgtctacagggagtaaagagtcataatgcactgtgtccacagggagtagggagacataatgcactgtgtctacagggagtagggagagataatgcactgtgtctatagggagtagggagacataatgcactgtgtctacagggaggagggagaga

Function

NR:

description
hypothetical protein EH28_11483

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1926923 False 2351 lncRNA 0.47 6 30989610 31044901
TU1926914 False 2501 lncRNA 0.47 6 31019345 31044576
TU1926926 True 369 lncRNA 0.48 3 31019345 31039176

Neighbor

gene id symbol gene type direction distance location
LOC110498786 LOC106589743 coding downstream 680346 30271979 ~ 30309264 (-)
foxn2a foxn2 coding downstream 830960 30108682 ~ 30158650 (-)
fbxo11a fbxo11 coding downstream 895896 30060126 ~ 30093714 (-)
golga4 golga4 coding downstream 1187773 29747225 ~ 29801837 (-)
itga9 LOC106589731 coding downstream 1243282 29606706 ~ 29746328 (-)
LOC110499326 LOC106589746 coding upstream 689955 31734856 ~ 31806658 (-)
LOC110499330 LOC106589750 coding upstream 1098608 32143509 ~ 32226222 (-)
LOC110499332 LOC106588150 coding upstream 1110036 32154937 ~ 32158796 (-)
LOC118942460 NA coding upstream 1457228 32502129 ~ 32502308 (-)
LOC118942014 NA coding upstream 1610056 32654957 ~ 32656185 (-)
G1684565 NA non-coding downstream 33587 30936633 ~ 30956023 (-)
G1684526 NA non-coding downstream 112807 30876510 ~ 30876803 (-)
G1684507 NA non-coding downstream 153597 30835635 ~ 30836013 (-)
G1684504 NA non-coding downstream 161991 30825799 ~ 30827619 (-)
G1684390 NA non-coding downstream 351898 30637282 ~ 30637712 (-)
G1684646 NA non-coding upstream 38847 31083748 ~ 31085290 (-)
G1684657 NA non-coding upstream 55541 31100442 ~ 31100817 (-)
G1684705 NA non-coding upstream 152214 31197115 ~ 31197863 (-)
G1684715 NA non-coding upstream 173586 31218487 ~ 31255183 (-)
G1684784 NA non-coding upstream 265854 31310755 ~ 31311415 (-)
LOC110499315 LOC106589727 other downstream 1443293 29541315 ~ 29571033 (-)
G1681658 NA other downstream 2453801 28535295 ~ 28535809 (-)
G1681623 NA other downstream 2515585 28473285 ~ 28474025 (-)
fa36a fa36a other downstream 3124782 27860741 ~ 27864828 (-)
LOC110499285 olig3 other downstream 3239180 27748849 ~ 27750461 (-)
G1684661 NA other upstream 66654 31111555 ~ 31113686 (-)
G1684920 NA other upstream 362693 31407594 ~ 31412844 (-)
LOC110499342 LOC106589762 other upstream 1766806 32810995 ~ 32812999 (-)
G1686887 NA other upstream 2032909 33077810 ~ 33078027 (-)
LOC110499358 LOC106589782 other upstream 2488772 33530945 ~ 33535225 (-)

Expression


Co-expression Network