Gene
RNA
| Item | Value |
|---|---|
| gene id | G1684237 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048584.1 |
| NCBI id | CM023238.2 |
| chromosome length | 46616863 |
| location | 31079644 ~ 31080197 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1926476 | True | 330 | lncRNA | 0.35 | 2 | 31079644 | 31080197 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110499324 | LOC106589740 | coding | upstream | 838178 | 30219786 ~ 30241466 (+) |
| LOC110499323 | ppp1r21 | coding | upstream | 861997 | 30194269 ~ 30217647 (+) |
| msh6 | msh6 | coding | upstream | 1019457 | 30025625 ~ 30060187 (+) |
| LOC110499316 | LOC106589729 | coding | upstream | 1491473 | 29572397 ~ 29588171 (+) |
| tmem87b | LOC106589726 | coding | upstream | 1543225 | 29510861 ~ 29536419 (+) |
| LOC118942000 | NA | coding | downstream | 360080 | 31440277 ~ 31440996 (+) |
| LOC110499596 | NA | coding | downstream | 414897 | 31495094 ~ 31511177 (+) |
| erlec1 | LOC106589745 | coding | downstream | 633509 | 31713706 ~ 31725878 (+) |
| wdr27 | wdr27 | coding | downstream | 742563 | 31822760 ~ 31978074 (+) |
| thbs2a | thbs2 | coding | downstream | 954002 | 32034199 ~ 32073088 (+) |
| G1684177 | NA | non-coding | upstream | 122629 | 30936746 ~ 30957015 (+) |
| G1683938 | nrxn1 | non-coding | upstream | 128600 | 30909474 ~ 30951044 (+) |
| G1683942 | nrxn1 | non-coding | upstream | 186732 | 30891074 ~ 30892912 (+) |
| G1683941 | LOC106611148 | non-coding | upstream | 389999 | 30663448 ~ 30689645 (+) |
| G1683936 | nrxn1 | non-coding | upstream | 468688 | 30608671 ~ 30610956 (+) |
| G1684264 | NA | non-coding | downstream | 31073 | 31111270 ~ 31153912 (+) |
| G1684289 | NA | non-coding | downstream | 59727 | 31139924 ~ 31148125 (+) |
| G1684751 | NA | non-coding | downstream | 203928 | 31284125 ~ 31284442 (+) |
| G1684752 | NA | non-coding | downstream | 204285 | 31284482 ~ 31284883 (+) |
| G1684781 | NA | non-coding | downstream | 228951 | 31309148 ~ 31309354 (+) |
| lhcgr | lhr | other | upstream | 1621723 | 29437357 ~ 29458499 (+) |
| G1681792 | NA | other | upstream | 2301235 | 28778006 ~ 28778409 (+) |
| G1681180 | NA | other | upstream | 2353149 | 28717361 ~ 28726495 (+) |
| G1680230 | NA | other | upstream | 3703825 | 27375354 ~ 27375819 (+) |
| G1686317 | LOC106589755 | other | downstream | 1574157 | 32654354 ~ 32661648 (+) |
| LOC118942060 | LOC106589768 | other | downstream | 2097096 | 33177293 ~ 33196167 (+) |
| G1687675 | NA | other | downstream | 3245640 | 34325837 ~ 34326254 (+) |
| LOC110499396 | LOC106589821 | other | downstream | 4301512 | 35381609 ~ 35384567 (+) |
| G1689347 | NA | other | downstream | 4601170 | 35681367 ~ 35682437 (+) |
