G1684821


Basic Information

Item Value
gene id G1684821
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 31338312 ~ 31338838 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1927174
tagttgaagtgtacctatgattaaaattacaggcctctctcatcttttaagtgggaggacttgcacaattggtggctgactaaatacttttttgccccactgtacatataaatTTGCGGTGTAGGGATCCTTTCTGGTATTGGAACAAGGAGATGATGCCCTGTGTAAACGTTTCTCTCACACTGCGTGGTGGTGATTTTCTGACATGAATATAATGTTATGTTTAGACAGCAATCAGAATCTTCACAAGCAGCATTGGTCCCCAGTCAGCTAAATATCAGGAGTGATTCTTGAATCAGTATCATGCCCATCGAGTTTGATACAAGATAAATCTTCTACCAATAGCAGTGGATGGTCAGCAGTAGCCTAACCAATTATGTGACTGAGATACTCATACAGAAGTCATTTTTAACATTCAGCAGATATGGGAGCAAGTAATGCTCAACCATTTTCATTATGAATCTTTCCTTTAAACTCACCCATCGGTCTCTGTCATCGCCGaaacactgctttgctttatcttggcc

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1927174 True 527 lncRNA 0.40 1 31338312 31338838

Neighbor

gene id symbol gene type direction distance location
LOC110499324 LOC106589740 coding upstream 1096846 30219786 ~ 30241466 (+)
LOC110499323 ppp1r21 coding upstream 1120665 30194269 ~ 30217647 (+)
msh6 msh6 coding upstream 1278125 30025625 ~ 30060187 (+)
LOC110499316 LOC106589729 coding upstream 1750141 29572397 ~ 29588171 (+)
tmem87b LOC106589726 coding upstream 1801893 29510861 ~ 29536419 (+)
LOC118942000 NA coding downstream 101439 31440277 ~ 31440996 (+)
LOC110499596 NA coding downstream 156256 31495094 ~ 31511177 (+)
erlec1 LOC106589745 coding downstream 374868 31713706 ~ 31725878 (+)
wdr27 wdr27 coding downstream 483922 31822760 ~ 31978074 (+)
thbs2a thbs2 coding downstream 695361 32034199 ~ 32073088 (+)
G1684796 NA non-coding upstream 18253 31319758 ~ 31320059 (+)
G1684786 NA non-coding upstream 25881 31312226 ~ 31312431 (+)
G1684781 NA non-coding upstream 28958 31309148 ~ 31309354 (+)
G1684752 NA non-coding upstream 53429 31284482 ~ 31284883 (+)
G1684751 NA non-coding upstream 53870 31284125 ~ 31284442 (+)
G1684835 NA non-coding downstream 7736 31346574 ~ 31346850 (+)
G1684866 NA non-coding downstream 33452 31372290 ~ 31372573 (+)
G1684881 NA non-coding downstream 46145 31384983 ~ 31385275 (+)
G1684937 NA non-coding downstream 91759 31430597 ~ 31430811 (+)
G1684946 NA non-coding downstream 97415 31436253 ~ 31436493 (+)
lhcgr lhr other upstream 1880391 29437357 ~ 29458499 (+)
G1681792 NA other upstream 2559903 28778006 ~ 28778409 (+)
G1681180 NA other upstream 2611817 28717361 ~ 28726495 (+)
G1680230 NA other upstream 3962493 27375354 ~ 27375819 (+)
G1686317 LOC106589755 other downstream 1315516 32654354 ~ 32661648 (+)
LOC118942060 LOC106589768 other downstream 1838455 33177293 ~ 33196167 (+)
G1687675 NA other downstream 2986999 34325837 ~ 34326254 (+)
LOC110499396 LOC106589821 other downstream 4042871 35381609 ~ 35384567 (+)
G1689347 NA other downstream 4342529 35681367 ~ 35682437 (+)

Expression


Co-expression Network