G1685172


Basic Information

Item Value
gene id G1685172
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 31604209 ~ 31604473 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1927542
gaaccccATATGTGGACATTgtccattcacctactccgcttctcacaaagacacagccgttggaaccaaaaaccattgcttgtgtttcttggaccaagcaagtctattcttcttagtgtcctttagtagttgtttctttgcagcaattcgaccatgaaggcctgattcatgcagtctcctctgaacagttgatgttgagatgtgtctgttatttgagctctgtgaagcatttatttgcaatttctgaggctggtaactctaatga

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1927542 True 265 lncRNA 0.42 1 31604209 31604473

Neighbor

gene id symbol gene type direction distance location
LOC110499596 NA coding upstream 93032 31495094 ~ 31511177 (+)
LOC118942000 NA coding upstream 163213 31440277 ~ 31440996 (+)
LOC110499324 LOC106589740 coding upstream 1362743 30219786 ~ 30241466 (+)
LOC110499323 ppp1r21 coding upstream 1386562 30194269 ~ 30217647 (+)
msh6 msh6 coding upstream 1544022 30025625 ~ 30060187 (+)
erlec1 LOC106589745 coding downstream 109233 31713706 ~ 31725878 (+)
wdr27 wdr27 coding downstream 218287 31822760 ~ 31978074 (+)
thbs2a thbs2 coding downstream 429726 32034199 ~ 32073088 (+)
agpat4 LOC106589751 coding downstream 519513 32123986 ~ 32144750 (+)
kcnk1b kcnk1 coding downstream 641430 32245903 ~ 32262177 (+)
G1685047 NA non-coding upstream 83427 31520425 ~ 31520782 (+)
G1684946 NA non-coding upstream 167716 31436253 ~ 31436493 (+)
G1684937 NA non-coding upstream 173398 31430597 ~ 31430811 (+)
G1684881 NA non-coding upstream 218934 31384983 ~ 31385275 (+)
G1684866 NA non-coding upstream 231636 31372290 ~ 31372573 (+)
G1685173 NA non-coding downstream 114 31604587 ~ 31604907 (+)
G1685201 NA non-coding downstream 23015 31627488 ~ 31627715 (+)
G1685202 NA non-coding downstream 23410 31627883 ~ 31628106 (+)
G1685211 NA non-coding downstream 31549 31636022 ~ 31636248 (+)
G1685242 NA non-coding downstream 58192 31662665 ~ 31669942 (+)
LOC110499316 LOC106589729 other upstream 2027651 29572397 ~ 29588171 (+)
lhcgr lhr other upstream 2146288 29437357 ~ 29458499 (+)
G1681792 NA other upstream 2825800 28778006 ~ 28778409 (+)
G1681180 NA other upstream 2877714 28717361 ~ 28726495 (+)
G1680230 NA other upstream 4228390 27375354 ~ 27375819 (+)
G1686317 LOC106589755 other downstream 1049881 32654354 ~ 32661648 (+)
LOC118942060 LOC106589768 other downstream 1572820 33177293 ~ 33196167 (+)
G1687675 NA other downstream 2721364 34325837 ~ 34326254 (+)
LOC110499396 LOC106589821 other downstream 3777236 35381609 ~ 35384567 (+)
G1689347 NA other downstream 4076894 35681367 ~ 35682437 (+)

Expression


Co-expression Network