G1685173


Basic Information

Item Value
gene id G1685173
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 31604587 ~ 31604907 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1927543
ttcagAGTTCTTTAAaagttccgtattgactgaccttcacttCTTAAataaatgatggactgtcgtttctctttgcttgtttgagctgttcttgccataatatggacttggaattttaccaaatagggctatcttctgtatacaacccctaccttgtcacaacacaactgattggcccaACGGGAaagggaaagaaattccacaaattaacttttaacaaggtacacctgttaattgaaatgcattccaggtgactacctcatgaagctgattgagagaatgccaagagtgtgcagagctgtcatcaatgcaaagggtggc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1927543 True 321 lncRNA 0.40 1 31604587 31604907

Neighbor

gene id symbol gene type direction distance location
LOC110499596 NA coding upstream 93410 31495094 ~ 31511177 (+)
LOC118942000 NA coding upstream 163591 31440277 ~ 31440996 (+)
LOC110499324 LOC106589740 coding upstream 1363121 30219786 ~ 30241466 (+)
LOC110499323 ppp1r21 coding upstream 1386940 30194269 ~ 30217647 (+)
msh6 msh6 coding upstream 1544400 30025625 ~ 30060187 (+)
erlec1 LOC106589745 coding downstream 108799 31713706 ~ 31725878 (+)
wdr27 wdr27 coding downstream 217853 31822760 ~ 31978074 (+)
thbs2a thbs2 coding downstream 429292 32034199 ~ 32073088 (+)
agpat4 LOC106589751 coding downstream 519079 32123986 ~ 32144750 (+)
kcnk1b kcnk1 coding downstream 640996 32245903 ~ 32262177 (+)
G1685172 NA non-coding upstream 114 31604209 ~ 31604473 (+)
G1685047 NA non-coding upstream 83805 31520425 ~ 31520782 (+)
G1684946 NA non-coding upstream 168094 31436253 ~ 31436493 (+)
G1684937 NA non-coding upstream 173776 31430597 ~ 31430811 (+)
G1684881 NA non-coding upstream 219312 31384983 ~ 31385275 (+)
G1685201 NA non-coding downstream 22581 31627488 ~ 31627715 (+)
G1685202 NA non-coding downstream 22976 31627883 ~ 31628106 (+)
G1685211 NA non-coding downstream 31115 31636022 ~ 31636248 (+)
G1685242 NA non-coding downstream 57758 31662665 ~ 31669942 (+)
G1685262 NA non-coding downstream 85171 31690078 ~ 31690328 (+)
LOC110499316 LOC106589729 other upstream 2028029 29572397 ~ 29588171 (+)
lhcgr lhr other upstream 2146666 29437357 ~ 29458499 (+)
G1681792 NA other upstream 2826178 28778006 ~ 28778409 (+)
G1681180 NA other upstream 2878092 28717361 ~ 28726495 (+)
G1680230 NA other upstream 4228768 27375354 ~ 27375819 (+)
G1686317 LOC106589755 other downstream 1049447 32654354 ~ 32661648 (+)
LOC118942060 LOC106589768 other downstream 1572386 33177293 ~ 33196167 (+)
G1687675 NA other downstream 2720930 34325837 ~ 34326254 (+)
LOC110499396 LOC106589821 other downstream 3776802 35381609 ~ 35384567 (+)
G1689347 NA other downstream 4076460 35681367 ~ 35682437 (+)

Expression


Co-expression Network