G1685242


Basic Information

Item Value
gene id G1685242
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 31662665 ~ 31669942 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1927613
gggatggtgtgttcagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcatcttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattcttgtcctatggacagagtctccc

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1927613 True 258 lncRNA 0.41 2 31662665 31669942

Neighbor

gene id symbol gene type direction distance location
LOC110499596 NA coding upstream 151488 31495094 ~ 31511177 (+)
LOC118942000 NA coding upstream 221669 31440277 ~ 31440996 (+)
LOC110499324 LOC106589740 coding upstream 1421199 30219786 ~ 30241466 (+)
LOC110499323 ppp1r21 coding upstream 1445018 30194269 ~ 30217647 (+)
msh6 msh6 coding upstream 1602478 30025625 ~ 30060187 (+)
erlec1 LOC106589745 coding downstream 43764 31713706 ~ 31725878 (+)
wdr27 wdr27 coding downstream 152818 31822760 ~ 31978074 (+)
thbs2a thbs2 coding downstream 364257 32034199 ~ 32073088 (+)
agpat4 LOC106589751 coding downstream 454044 32123986 ~ 32144750 (+)
kcnk1b kcnk1 coding downstream 575961 32245903 ~ 32262177 (+)
G1685211 NA non-coding upstream 26417 31636022 ~ 31636248 (+)
G1685202 NA non-coding upstream 34559 31627883 ~ 31628106 (+)
G1685201 NA non-coding upstream 34950 31627488 ~ 31627715 (+)
G1685173 NA non-coding upstream 57758 31604587 ~ 31604907 (+)
G1685172 NA non-coding upstream 58192 31604209 ~ 31604473 (+)
G1685262 NA non-coding downstream 20136 31690078 ~ 31690328 (+)
G1685272 NA non-coding downstream 29943 31699885 ~ 31700108 (+)
G1685273 NA non-coding downstream 31010 31700952 ~ 31701183 (+)
G1685274 NA non-coding downstream 32867 31702809 ~ 31703020 (+)
G1685275 NA non-coding downstream 33605 31703547 ~ 31703795 (+)
LOC110499316 LOC106589729 other upstream 2086107 29572397 ~ 29588171 (+)
lhcgr lhr other upstream 2204744 29437357 ~ 29458499 (+)
G1681792 NA other upstream 2884256 28778006 ~ 28778409 (+)
G1681180 NA other upstream 2936170 28717361 ~ 28726495 (+)
G1680230 NA other upstream 4286846 27375354 ~ 27375819 (+)
G1686317 LOC106589755 other downstream 984412 32654354 ~ 32661648 (+)
LOC118942060 LOC106589768 other downstream 1507351 33177293 ~ 33196167 (+)
G1687675 NA other downstream 2655895 34325837 ~ 34326254 (+)
LOC110499396 LOC106589821 other downstream 3711767 35381609 ~ 35384567 (+)
G1689347 NA other downstream 4011425 35681367 ~ 35682437 (+)

Expression


Co-expression Network