G1685272


Basic Information

Item Value
gene id G1685272
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 31699885 ~ 31700108 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1927643
ggcaaataaaataaatctgAGATGTCATAAATGTATTGAATCTCCTTGATGCATGTATGGTTGGAGCATGTTCACATTTTCCAGATAGCATGCGTAAccctatggcccctggtcaaatGAAGTAcactatagggaacagggtgccatttgagacacagtcgataagtccacacacacacacacacacacacacacacacacacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1927643 True 224 lncRNA 0.43 1 31699885 31700108

Neighbor

gene id symbol gene type direction distance location
LOC110499596 NA coding upstream 188708 31495094 ~ 31511177 (+)
LOC118942000 NA coding upstream 258889 31440277 ~ 31440996 (+)
LOC110499324 LOC106589740 coding upstream 1458419 30219786 ~ 30241466 (+)
LOC110499323 ppp1r21 coding upstream 1482238 30194269 ~ 30217647 (+)
msh6 msh6 coding upstream 1639698 30025625 ~ 30060187 (+)
erlec1 LOC106589745 coding downstream 13598 31713706 ~ 31725878 (+)
wdr27 wdr27 coding downstream 122652 31822760 ~ 31978074 (+)
thbs2a thbs2 coding downstream 334091 32034199 ~ 32073088 (+)
agpat4 LOC106589751 coding downstream 423878 32123986 ~ 32144750 (+)
kcnk1b kcnk1 coding downstream 545795 32245903 ~ 32262177 (+)
G1685262 NA non-coding upstream 9557 31690078 ~ 31690328 (+)
G1685242 NA non-coding upstream 29943 31662665 ~ 31669942 (+)
G1685211 NA non-coding upstream 63637 31636022 ~ 31636248 (+)
G1685202 NA non-coding upstream 71779 31627883 ~ 31628106 (+)
G1685201 NA non-coding upstream 72170 31627488 ~ 31627715 (+)
G1685273 NA non-coding downstream 844 31700952 ~ 31701183 (+)
G1685274 NA non-coding downstream 2701 31702809 ~ 31703020 (+)
G1685275 NA non-coding downstream 3439 31703547 ~ 31703795 (+)
G1685276 NA non-coding downstream 3927 31704035 ~ 31704366 (+)
G1685277 NA non-coding downstream 4287 31704395 ~ 31704671 (+)
LOC110499316 LOC106589729 other upstream 2123327 29572397 ~ 29588171 (+)
lhcgr lhr other upstream 2241964 29437357 ~ 29458499 (+)
G1681792 NA other upstream 2921476 28778006 ~ 28778409 (+)
G1681180 NA other upstream 2973390 28717361 ~ 28726495 (+)
G1680230 NA other upstream 4324066 27375354 ~ 27375819 (+)
G1686317 LOC106589755 other downstream 954246 32654354 ~ 32661648 (+)
LOC118942060 LOC106589768 other downstream 1477185 33177293 ~ 33196167 (+)
G1687675 NA other downstream 2625729 34325837 ~ 34326254 (+)
LOC110499396 LOC106589821 other downstream 3681601 35381609 ~ 35384567 (+)
G1689347 NA other downstream 3981259 35681367 ~ 35682437 (+)

Expression


Co-expression Network