G1685274


Basic Information

Item Value
gene id G1685274
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 31702809 ~ 31703020 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1927645
tcttgattTTCATCAAGGGTGGCCCAAATAGACTGGATGACAAAGGCAGGTttctgtagaaacacacacacgcacacactactCCTCCCACTCATGTAATTATAAAGACCGTAGAGGTTTACATGGTGGGGTTGACAAGACTCAATGTCCTCACGTTGCATCATCTCCTCTGTGGGTGGTGTCTGAGTCAGTCTCAGCAGTAATGGTGTTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1927645 True 212 lncRNA 0.47 1 31702809 31703020

Neighbor

gene id symbol gene type direction distance location
LOC110499596 NA coding upstream 191632 31495094 ~ 31511177 (+)
LOC118942000 NA coding upstream 261813 31440277 ~ 31440996 (+)
LOC110499324 LOC106589740 coding upstream 1461343 30219786 ~ 30241466 (+)
LOC110499323 ppp1r21 coding upstream 1485162 30194269 ~ 30217647 (+)
msh6 msh6 coding upstream 1642622 30025625 ~ 30060187 (+)
erlec1 LOC106589745 coding downstream 10686 31713706 ~ 31725878 (+)
wdr27 wdr27 coding downstream 119740 31822760 ~ 31978074 (+)
thbs2a thbs2 coding downstream 331179 32034199 ~ 32073088 (+)
agpat4 LOC106589751 coding downstream 420966 32123986 ~ 32144750 (+)
kcnk1b kcnk1 coding downstream 542883 32245903 ~ 32262177 (+)
G1685273 NA non-coding upstream 1626 31700952 ~ 31701183 (+)
G1685272 NA non-coding upstream 2701 31699885 ~ 31700108 (+)
G1685262 NA non-coding upstream 12481 31690078 ~ 31690328 (+)
G1685242 NA non-coding upstream 32867 31662665 ~ 31669942 (+)
G1685211 NA non-coding upstream 66561 31636022 ~ 31636248 (+)
G1685275 NA non-coding downstream 527 31703547 ~ 31703795 (+)
G1685276 NA non-coding downstream 1015 31704035 ~ 31704366 (+)
G1685277 NA non-coding downstream 1375 31704395 ~ 31704671 (+)
G1685279 NA non-coding downstream 3738 31706758 ~ 31706971 (+)
G1685280 NA non-coding downstream 4484 31707504 ~ 31707707 (+)
LOC110499316 LOC106589729 other upstream 2126251 29572397 ~ 29588171 (+)
lhcgr lhr other upstream 2244888 29437357 ~ 29458499 (+)
G1681792 NA other upstream 2924400 28778006 ~ 28778409 (+)
G1681180 NA other upstream 2976314 28717361 ~ 28726495 (+)
G1680230 NA other upstream 4326990 27375354 ~ 27375819 (+)
G1686317 LOC106589755 other downstream 951334 32654354 ~ 32661648 (+)
LOC118942060 LOC106589768 other downstream 1474273 33177293 ~ 33196167 (+)
G1687675 NA other downstream 2622817 34325837 ~ 34326254 (+)
LOC110499396 LOC106589821 other downstream 3678689 35381609 ~ 35384567 (+)
G1689347 NA other downstream 3978347 35681367 ~ 35682437 (+)

Expression


Co-expression Network