G1685275


Basic Information

Item Value
gene id G1685275
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 31703547 ~ 31703795 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1927646
GATCAGTATATCTGAAAGGATAAGCGATATGCAAAATGTCCACCTTGCCTATCAGGTGACAATATCAAACTACTAGATTGCTTATACCTAGGGGGAAGGGGCTAGAGATTGTTTCTGAATCCGTTTCAGAAACAAAAGCTTCTCTCATTACTCTCAGTAGAGGTGTGTAGaatcactacagtacagtattacacacacgcatgcacacgcgcacacacacacacacagtagcctaGCTCTATCTCTGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1927646 True 249 lncRNA 0.43 1 31703547 31703795

Neighbor

gene id symbol gene type direction distance location
LOC110499596 NA coding upstream 192370 31495094 ~ 31511177 (+)
LOC118942000 NA coding upstream 262551 31440277 ~ 31440996 (+)
LOC110499324 LOC106589740 coding upstream 1462081 30219786 ~ 30241466 (+)
LOC110499323 ppp1r21 coding upstream 1485900 30194269 ~ 30217647 (+)
msh6 msh6 coding upstream 1643360 30025625 ~ 30060187 (+)
erlec1 LOC106589745 coding downstream 9911 31713706 ~ 31725878 (+)
wdr27 wdr27 coding downstream 118965 31822760 ~ 31978074 (+)
thbs2a thbs2 coding downstream 330404 32034199 ~ 32073088 (+)
agpat4 LOC106589751 coding downstream 420191 32123986 ~ 32144750 (+)
kcnk1b kcnk1 coding downstream 542108 32245903 ~ 32262177 (+)
G1685274 NA non-coding upstream 527 31702809 ~ 31703020 (+)
G1685273 NA non-coding upstream 2364 31700952 ~ 31701183 (+)
G1685272 NA non-coding upstream 3439 31699885 ~ 31700108 (+)
G1685262 NA non-coding upstream 13219 31690078 ~ 31690328 (+)
G1685242 NA non-coding upstream 33605 31662665 ~ 31669942 (+)
G1685276 NA non-coding downstream 240 31704035 ~ 31704366 (+)
G1685277 NA non-coding downstream 600 31704395 ~ 31704671 (+)
G1685279 NA non-coding downstream 2963 31706758 ~ 31706971 (+)
G1685280 NA non-coding downstream 3709 31707504 ~ 31707707 (+)
G1685281 NA non-coding downstream 5150 31708945 ~ 31709162 (+)
LOC110499316 LOC106589729 other upstream 2126989 29572397 ~ 29588171 (+)
lhcgr lhr other upstream 2245626 29437357 ~ 29458499 (+)
G1681792 NA other upstream 2925138 28778006 ~ 28778409 (+)
G1681180 NA other upstream 2977052 28717361 ~ 28726495 (+)
G1680230 NA other upstream 4327728 27375354 ~ 27375819 (+)
G1686317 LOC106589755 other downstream 950559 32654354 ~ 32661648 (+)
LOC118942060 LOC106589768 other downstream 1473498 33177293 ~ 33196167 (+)
G1687675 NA other downstream 2622042 34325837 ~ 34326254 (+)
LOC110499396 LOC106589821 other downstream 3677914 35381609 ~ 35384567 (+)
G1689347 NA other downstream 3977572 35681367 ~ 35682437 (+)

Expression


Co-expression Network