G1685473


Basic Information

Item Value
gene id G1685473
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 31914096 ~ 31916230 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1927854
ttgagaacaagttctcatttacaattgcgacctggccaagataaagcaaagcagttcgacacatacaacgacacagagttacacatggagtaaaacaaacatacagtcaataatacagtataaacaagtctatatacgatgtgagcaaatgaggtgagataagggaggtaaaggcaaaaaggccttggtggcaaagtaaatacaatatagcaagtaaaacactggaatggtagatttgcaatgggagaatgtgcaaagtagaaatacaaataatggggtgcaaaggagcaaaataaataaataaatcaaatacagtagggaaagaggtagttgtttgggctaaattataggtgggctatgtacaggtgcagtaatctgtgagctgctctgacagttggtgcttaaagctagtgagggagat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1927854 True 421 lncRNA 0.38 2 31914096 31916230

Neighbor

gene id symbol gene type direction distance location
erlec1 LOC106589745 coding upstream 188218 31713706 ~ 31725878 (+)
LOC110499596 NA coding upstream 402919 31495094 ~ 31511177 (+)
LOC118942000 NA coding upstream 473100 31440277 ~ 31440996 (+)
LOC110499324 LOC106589740 coding upstream 1672630 30219786 ~ 30241466 (+)
LOC110499323 ppp1r21 coding upstream 1696449 30194269 ~ 30217647 (+)
thbs2a thbs2 coding downstream 117969 32034199 ~ 32073088 (+)
agpat4 LOC106589751 coding downstream 207756 32123986 ~ 32144750 (+)
kcnk1b kcnk1 coding downstream 329673 32245903 ~ 32262177 (+)
LOC110499334 LOC106589753 coding downstream 375035 32291265 ~ 32476165 (+)
LOC110499531 NA coding downstream 696728 32612958 ~ 32613933 (+)
G1685291 NA non-coding upstream 175590 31734869 ~ 31738506 (+)
G1685282 NA non-coding upstream 204535 31709330 ~ 31709561 (+)
G1685281 NA non-coding upstream 204934 31708945 ~ 31709162 (+)
G1685280 NA non-coding upstream 206389 31707504 ~ 31707707 (+)
G1685279 NA non-coding upstream 207125 31706758 ~ 31706971 (+)
G1685476 NA non-coding downstream 6036 31922266 ~ 31922621 (+)
wdr27 wdr27 non-coding downstream 7729 31822760 ~ 31978074 (+)
G1685533 NA non-coding downstream 98365 32014595 ~ 32015103 (+)
G1685550 NA non-coding downstream 132141 32048371 ~ 32054955 (+)
G1685551 NA non-coding downstream 172687 32088917 ~ 32089177 (+)
LOC110499316 LOC106589729 other upstream 2337538 29572397 ~ 29588171 (+)
lhcgr lhr other upstream 2456175 29437357 ~ 29458499 (+)
G1681792 NA other upstream 3135687 28778006 ~ 28778409 (+)
G1681180 NA other upstream 3187601 28717361 ~ 28726495 (+)
G1680230 NA other upstream 4538277 27375354 ~ 27375819 (+)
G1686317 LOC106589755 other downstream 738124 32654354 ~ 32661648 (+)
LOC118942060 LOC106589768 other downstream 1261063 33177293 ~ 33196167 (+)
G1687675 NA other downstream 2409607 34325837 ~ 34326254 (+)
LOC110499396 LOC106589821 other downstream 3465479 35381609 ~ 35384567 (+)
G1689347 NA other downstream 3765137 35681367 ~ 35682437 (+)

Expression


Co-expression Network