G1685584


Basic Information

Item Value
gene id G1685584
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 32109522 ~ 32109737 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1927968
AAATAAATGGCTCGTTCTTTTTTTCCTTACACCGTAGGTTCATGTACTTTGACATGAAGCGGTCAAATTAGTGGTCTATTTTCGTTTTTGACCTTTAATCTCAGAAAAATGGCCTTAACTAAAGCGTTGAGGCCTCGACGCCATCTTGTTTCAGGGCTAATTGCCCAGTAgtccaaacctatgctcaccaagtttcatTTTCAAAGTCTTTTCCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1927968 True 216 lncRNA 0.39 1 32109522 32109737

Neighbor

gene id symbol gene type direction distance location
thbs2a thbs2 coding upstream 36434 32034199 ~ 32073088 (+)
wdr27 wdr27 coding upstream 131448 31822760 ~ 31978074 (+)
erlec1 LOC106589745 coding upstream 383644 31713706 ~ 31725878 (+)
LOC110499596 NA coding upstream 598345 31495094 ~ 31511177 (+)
LOC118942000 NA coding upstream 668526 31440277 ~ 31440996 (+)
agpat4 LOC106589751 coding downstream 14249 32123986 ~ 32144750 (+)
kcnk1b kcnk1 coding downstream 136166 32245903 ~ 32262177 (+)
LOC110499334 LOC106589753 coding downstream 181528 32291265 ~ 32476165 (+)
LOC110499531 NA coding downstream 503221 32612958 ~ 32613933 (+)
LOC110499339 LOC106589759 coding downstream 580350 32690087 ~ 32702525 (+)
G1685572 NA non-coding upstream 15546 32093649 ~ 32093976 (+)
G1685551 NA non-coding upstream 20345 32088917 ~ 32089177 (+)
G1685550 NA non-coding upstream 54567 32048371 ~ 32054955 (+)
G1685533 NA non-coding upstream 94419 32014595 ~ 32015103 (+)
G1685630 LOC106611298 non-coding downstream 67036 32176773 ~ 32177222 (+)
G1685680 NA non-coding downstream 128627 32238364 ~ 32241206 (+)
G1685791 NA non-coding downstream 370533 32480270 ~ 32480604 (+)
G1685794 NA non-coding downstream 373124 32482861 ~ 32483070 (+)
LOC110499316 LOC106589729 other upstream 2532964 29572397 ~ 29588171 (+)
lhcgr lhr other upstream 2651601 29437357 ~ 29458499 (+)
G1681792 NA other upstream 3331113 28778006 ~ 28778409 (+)
G1681180 NA other upstream 3383027 28717361 ~ 28726495 (+)
G1680230 NA other upstream 4733703 27375354 ~ 27375819 (+)
G1686317 LOC106589755 other downstream 544617 32654354 ~ 32661648 (+)
LOC118942060 LOC106589768 other downstream 1067556 33177293 ~ 33196167 (+)
G1687675 NA other downstream 2216100 34325837 ~ 34326254 (+)
LOC110499396 LOC106589821 other downstream 3271972 35381609 ~ 35384567 (+)
G1689347 NA other downstream 3571630 35681367 ~ 35682437 (+)

Expression


Co-expression Network