G1685680


Basic Information

Item Value
gene id G1685680
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 32238364 ~ 32241206 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1928076
acattgtcacaccctggtcaaagtattttgtgtttatctttatttatttggtcaggccagggtgtggcatgggtttttgtatgtggtgtgtatgtatggggattgtagctagtggggtgttctagctaagtctatggctgtctgaagtggttctcaatcagaggcaggtgtttatcgttgtctctgattgggaaccatatttaggcagccatattctttgagtttgtcgtgggtgattgtccttagtgtccttatgtcattgttctgtgttaggttacacaagtataggc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1928076 True 290 lncRNA 0.42 2 32238364 32241206

Neighbor

gene id symbol gene type direction distance location
agpat4 LOC106589751 coding upstream 94900 32123986 ~ 32144750 (+)
thbs2a thbs2 coding upstream 165276 32034199 ~ 32073088 (+)
wdr27 wdr27 coding upstream 260290 31822760 ~ 31978074 (+)
erlec1 LOC106589745 coding upstream 512486 31713706 ~ 31725878 (+)
LOC110499596 NA coding upstream 727187 31495094 ~ 31511177 (+)
kcnk1b kcnk1 coding downstream 4697 32245903 ~ 32262177 (+)
LOC110499334 LOC106589753 coding downstream 50059 32291265 ~ 32476165 (+)
LOC110499531 NA coding downstream 371752 32612958 ~ 32613933 (+)
LOC110499339 LOC106589759 coding downstream 448881 32690087 ~ 32702525 (+)
LOC110499338 LOC106589757 coding downstream 461585 32702791 ~ 32736730 (+)
G1685630 LOC106611298 non-coding upstream 61142 32176773 ~ 32177222 (+)
G1685584 NA non-coding upstream 128627 32109522 ~ 32109737 (+)
G1685572 NA non-coding upstream 144388 32093649 ~ 32093976 (+)
G1685551 NA non-coding upstream 149187 32088917 ~ 32089177 (+)
G1685791 NA non-coding downstream 239064 32480270 ~ 32480604 (+)
G1685794 NA non-coding downstream 241655 32482861 ~ 32483070 (+)
G1685798 NA non-coding downstream 245709 32486915 ~ 32487149 (+)
G1685799 NA non-coding downstream 246190 32487396 ~ 32487632 (+)
G1685805 NA non-coding downstream 257601 32498807 ~ 32499015 (+)
LOC110499316 LOC106589729 other upstream 2661806 29572397 ~ 29588171 (+)
lhcgr lhr other upstream 2780443 29437357 ~ 29458499 (+)
G1681792 NA other upstream 3459955 28778006 ~ 28778409 (+)
G1681180 NA other upstream 3511869 28717361 ~ 28726495 (+)
G1680230 NA other upstream 4862545 27375354 ~ 27375819 (+)
G1686317 LOC106589755 other downstream 413148 32654354 ~ 32661648 (+)
LOC118942060 LOC106589768 other downstream 936087 33177293 ~ 33196167 (+)
G1687675 NA other downstream 2084631 34325837 ~ 34326254 (+)
LOC110499396 LOC106589821 other downstream 3140503 35381609 ~ 35384567 (+)
G1689347 NA other downstream 3440161 35681367 ~ 35682437 (+)

Expression


Co-expression Network