G1685791


Basic Information

Item Value
gene id G1685791
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 32480270 ~ 32480604 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1928224
aagcttctgttaggctaattgacatcatttgagtcaattggagatgtacctgtggatgtatttcaaggcctaccttcaaactcagtgcccctttgcttgacatcatgggaaaatcaaaagaaatcactcaagacctcagaaaaaaaattgtagacctccacaagtctggttcatccttgggagcaatttccaaatgcctgaaggtaccacgttcagctGTACaaccaatagtacgcaagtataaacaccatgggaccacacagctgtcataccgctcaggaaggagatgcgctctgtctcctagagatgaatgtactttgatgcgaaaagtgcaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1928224 True 335 lncRNA 0.43 1 32480270 32480604

Neighbor

gene id symbol gene type direction distance location
LOC110499334 LOC106589753 coding upstream 4105 32291265 ~ 32476165 (+)
kcnk1b kcnk1 coding upstream 218093 32245903 ~ 32262177 (+)
agpat4 LOC106589751 coding upstream 336806 32123986 ~ 32144750 (+)
thbs2a thbs2 coding upstream 407182 32034199 ~ 32073088 (+)
wdr27 wdr27 coding upstream 502196 31822760 ~ 31978074 (+)
LOC110499531 NA coding downstream 132354 32612958 ~ 32613933 (+)
LOC110499339 LOC106589759 coding downstream 209483 32690087 ~ 32702525 (+)
LOC110499338 LOC106589757 coding downstream 222187 32702791 ~ 32736730 (+)
LOC110499341 LOC106589760 coding downstream 266987 32747591 ~ 32760047 (+)
LOC110499344 LOC106589763 coding downstream 369093 32849697 ~ 32863389 (+)
G1685680 NA non-coding upstream 239064 32238364 ~ 32241206 (+)
G1685630 LOC106611298 non-coding upstream 303048 32176773 ~ 32177222 (+)
G1685584 NA non-coding upstream 370533 32109522 ~ 32109737 (+)
G1685572 NA non-coding upstream 386294 32093649 ~ 32093976 (+)
G1685794 NA non-coding downstream 2257 32482861 ~ 32483070 (+)
G1685798 NA non-coding downstream 6311 32486915 ~ 32487149 (+)
G1685799 NA non-coding downstream 6792 32487396 ~ 32487632 (+)
G1685805 NA non-coding downstream 18203 32498807 ~ 32499015 (+)
G1685807 NA non-coding downstream 21055 32501659 ~ 32501871 (+)
LOC110499316 LOC106589729 other upstream 2903712 29572397 ~ 29588171 (+)
lhcgr lhr other upstream 3022349 29437357 ~ 29458499 (+)
G1681792 NA other upstream 3701861 28778006 ~ 28778409 (+)
G1681180 NA other upstream 3753775 28717361 ~ 28726495 (+)
G1680230 NA other upstream 5104451 27375354 ~ 27375819 (+)
G1686317 LOC106589755 other downstream 173750 32654354 ~ 32661648 (+)
LOC118942060 LOC106589768 other downstream 696689 33177293 ~ 33196167 (+)
G1687675 NA other downstream 1845233 34325837 ~ 34326254 (+)
LOC110499396 LOC106589821 other downstream 2901105 35381609 ~ 35384567 (+)
G1689347 NA other downstream 3200763 35681367 ~ 35682437 (+)

Expression


Co-expression Network