G1686333


Basic Information

Item Value
gene id G1686333
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 32676395 ~ 32678456 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1928825
CATTTCATTCTTTACATACAGTACAAATCGTATTAGTGGAGGCTGCGAACGGGAGGACAGCTCAtgatggctggaacggagtaaatGAAGTGGCAAAcgcatggaaaccatgtatttgataccattccactccatCCACTCCCACAAGcccctccccaattaaggtgccaccaacctcctgtgatttgTCAATACAATACATCAGTAGGACAGTTTGGTTACTACAGCAGGAAATGTACATTTAAATAAACAAGATGTGAGGAAACAGGCAATGTGCGTTTCTGAGAGTACATTGCAGTCATCCCACAGGTGGCGCCACAGGGCTGCCATCACATGCAGATGCCCATAACACAACAGGCACTGTTACCTGGTTTATGTTCAGTAGGCACGAAATGGACGAAAAGTGTCCAAAAAGGAGTGAAATCAGAAGGTACCATCTGGCCTTGTCCAATAAGACATGcttatttttgttttctgttgcaaaacattttcccACGgtttgccctaatgaacatggccTAGTACAATCTGCAGTACAAACTTCAATCCCAGTATGAGTAGTTAGTACCACCTGTAACGTGGCCCTTCTGTCATAGCCTGGTTAACCCATATGTAACACTGCACTCATGAAGTGAAACAATGGTGAGCGCTGCGTTCattctggtttaaccaggctactTCAGTCAGGCTCAGTGGAGGTTGccgaggggaggacagctcataataatgtctggaatggagtgaatggaatggCATTACCaccagcccgtcctccccaattaaggtgccaccaacctcctgtggtcagGCTCTTCTGGGTCAAAGGAAGACACTCATTCAAATAAGGCCCAAATGCTGAATGTCTGACCACAGCATACATACCACCATAGGGTTGCAAAATTACGGTAACTTTCACaacattcctaggttttctggtTGGAAAATTCCTGGAATCAGAAGGGTAAAAGCAGGACattttccaaccaggatttctgaaaAACCAAGGAACTTTGAGAAAGTTAATGTAATGTTGCAACCCTAACCCTGGTTGCAACCCTAAAGATTATAGCTACAAATATCAGGACACTTGACTTCTCTGCTTGCTAGCTACAGGCCATACTGTTCATGGTAATGTCATGCTTCAGAGGCCATAAGAGATGCTAGAAGGCTGTAACTTGGTAAGGAAAGTGACCTGTTGAGGCTGAAATGTTTAACCTTAGGTAAAAATATATTATGTGCACTTGAATTTGATTGGACTACCATATGTTGACATTTTGTAATGATAGAAAAACAGACTTAGCATTCTCCTTCAGTGACTGGTTACAATAAATACAACCATCAATTGGCAATGGGAACCTAACCTCTGCCACAGTGGGAGTCTTTCACAGTTTTGGGTCTTTATAATCATCTCTTTCAGCCAACTACCAGTGCAGGGCTACTCAACTGTCTTAACATACCATTCTTTACCCCtgtatatttatttaaaaagATAATTTGTAAGATATATTCGTTCTGAATTTtgacactactctctctctcttatgtctgTAGTTACAGCACAACTCTCTGATGGGTTCCAGGGAAGGTAGAAACATATCTGACTTCCTATTGGTTATGAGCAGGGAAGAGCTTTATTGGCTGATGAAACTGAAGTAAGGCAGAGGTTTTTGAACAgtgttcttcttcctcctctccagtctctcaaTCTGGTCCATTCTTCCTCCCTACTCTTCCCTCTTCATCTGTCTCGCTTCTCACcatcctctctttctgctccAGTGCTATACAGTCTTCCTCCATCTCAAGTCTCTCCCCCTCTTACCTCCTCTTCGACTTggcctcctcctctaccaccagGTAAAGAAGGGTTTCCTGCTCTGGAAGCTCTGTGTGTAGGACTCACTGTTGGCTCTCTGTGGTGCTCTGGCTGTCTCCACTATGACTGGGGGCATCTGGACCAGTTGTAGGGGGGTCTTACGCTCCTTCAGGGCCTGGCTCAGGTTCAAA

Function

NR:

description
PREDICTED: phosphatidylinositol 4-kinase type 2-alpha-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1928825 True 2007 lncRNA 0.44 2 32676395 32678456

Neighbor

gene id symbol gene type direction distance location
LOC110499531 NA coding upstream 62462 32612958 ~ 32613933 (+)
LOC110499334 LOC106589753 coding upstream 200230 32291265 ~ 32476165 (+)
kcnk1b kcnk1 coding upstream 414218 32245903 ~ 32262177 (+)
agpat4 LOC106589751 coding upstream 532931 32123986 ~ 32144750 (+)
thbs2a thbs2 coding upstream 603307 32034199 ~ 32073088 (+)
LOC110499339 LOC106589759 coding downstream 11631 32690087 ~ 32702525 (+)
LOC110499338 LOC106589757 coding downstream 24335 32702791 ~ 32736730 (+)
LOC110499341 LOC106589760 coding downstream 69135 32747591 ~ 32760047 (+)
LOC110499344 LOC106589763 coding downstream 171241 32849697 ~ 32863389 (+)
LOC110499532 hpse2 coding downstream 384579 33063035 ~ 33132825 (+)
G1686303 NA non-coding upstream 34109 32642049 ~ 32642286 (+)
G1686302 NA non-coding upstream 34693 32641488 ~ 32641702 (+)
G1686296 NA non-coding upstream 49560 32626532 ~ 32626835 (+)
G1686294 NA non-coding upstream 51931 32624262 ~ 32624464 (+)
G1686292 NA non-coding upstream 54868 32621277 ~ 32621527 (+)
G1686310 NA non-coding downstream 28371 32706827 ~ 32707141 (+)
G1686352 NA non-coding downstream 66412 32744868 ~ 32745219 (+)
G1686362 NA non-coding downstream 93772 32772228 ~ 32772613 (+)
G1686364 NA non-coding downstream 96924 32775380 ~ 32775589 (+)
G1686366 NA non-coding downstream 97964 32776420 ~ 32776670 (+)
G1686317 LOC106589755 other upstream 14747 32654354 ~ 32661648 (+)
LOC110499316 LOC106589729 other upstream 3099837 29572397 ~ 29588171 (+)
lhcgr lhr other upstream 3218474 29437357 ~ 29458499 (+)
G1681792 NA other upstream 3897986 28778006 ~ 28778409 (+)
G1681180 NA other upstream 3949900 28717361 ~ 28726495 (+)
LOC118942060 LOC106589768 other downstream 498837 33177293 ~ 33196167 (+)
G1687675 NA other downstream 1647381 34325837 ~ 34326254 (+)
LOC110499396 LOC106589821 other downstream 2703253 35381609 ~ 35384567 (+)
G1689347 NA other downstream 3002911 35681367 ~ 35682437 (+)
LOC118942012 LOC106589797 other downstream 3022764 35701200 ~ 35702156 (+)

Expression


Co-expression Network