G1686524


Basic Information

Item Value
gene id G1686524
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 32864892 ~ 32868963 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1929051
TGAGTTGCTTGGTTTCTCTGTTCTCTGATTTCTCCAGCTCAGCTATTTGCCAGGTCATAAGGATGTGTGTGGGAGGGACAAAGCAGTTCAGTGGAGTCCTTACAGGCAAAGTAAATCAATGCCACTGAGTCTCCCCATAGATCACCCCCGTGTTTGTGTGCGTCAAGGAAAGCACTGGCTTCAAGTCAGAGTGCATCACATCTCCACCCACCTTCCCTGCAGTGCAGCGCTGTGACGCAGgatctttcttcatttgtttctctctacttccctctcactctccctctgtatATGCTGTCTGTAAATCAGTCATCTGTCAGTATTGCACAATCCAGAGCAGCTCATTCTAAGCTCAGTCTAATAGCAGCTAACCAGTAGTGAATAGTGATGGTCCCAGGCAGGTTTTAGGGAATTATTATTGATACAAATTAATAGGACAGAGCCCATTGTCGCACTACCTATATATTAAAGTAAGGGCACTATaaaacctcttcctctctctatacatctctaACTCCAAACCCCTGTGTACATTGGCATACATTCCTATCAAACAACATCCATTCCTCTCATCTGAGCCTGTTTGACTGTACAgggatgtctgtctgtccttgAAAATGTTACATTGTCCTGATATCCTGACTGTGCTCTTCAGCTGTCAGCTTATATTAGACAGGTCTTTTTCTCTCATGCTTATCAGATTTGTATAGACTATAACTCCTTCACTAAAACTACACATCCAATTCACCCTGGCTTTTCATCAGGTCTGCATCCTGCTCCTCTCTGAGTCCCAAGGTAGGAGTTGTCCTtaaatacagtggcttgtgatagtattcaccctccttggcatttttcctattttgttgccttacaacctggaattaaaatatattttggggggggttgtatcatttgatttacacaacatgcctaccactttgaagatgcaaaatattttttgtgaaacaaacatgaaataagacaaaaaaaaactgaaaacttgaccGTGCATaactattaccccccccccccaaagtcaatactttgtagagccactttttgcaacaattacagctgcaagtctcttggggtatgtctctgtaggcttggcacatctagccactgggagttttgcccattcttcaagttggatgggttctgctggtgtactgcaatctttaagtcataccacagattttcaattggattgaggtctgggctttgactaggccattccaagacatttaaatgtttccccttaaaccactcgagtgttgctttagcagtatgcttagggtcattgtcctgctggaaggtgaacctccgtcccagtctcaaatctctggaagactgaaacaggtttcacctcaagaatgtccctgtactcattccttcaattttgatcagtttcccagtccctgctgatggaaaaacatccccacagcataatgctgccaccatcatgggatggtgttctcagggtgatgcgaggtgttgggtttgcgccagacgtagcgttttccttgatttccaaaaagctcaattttagtctcatctgaccagagtaccttcttccatatgtttgggggaGGCTCCCACATGCCtgttggcgaacaccaaacatgtttgcttatttttttctttaagcaaaggCTTTTTTTCTGGTCagtcttccgtaaagcccagctctctGGAGTgtacagctccttcagggttatctttggtctccttgttgcctctctgattaatgccctctttgcctggtccttgagttttggtgggtggccctctcttggcaggatTGTTGTGGTGAcgtattctttccatttttttttatgatGGATTtaatgggatgttcaaagttgatgatatttttttataacccaaccaaccctgatctgtacttctccacaactttgtccctgacctgtttggagaactcATTGGTCATCATGGTGCTGCTTACTTGGTGTTTCAGACTCTGgggtctttcagaacaggtgtatatatcctgagatcatgtgacagatcatgtgacacttagattgcccACAAgttgactttatttaactaattatgtgacatctgaaggtaattggttgcaccagatcttatttaggggcttcatagcaaagggggtgaatatgcaggcaccACTTGtccattaaaaaacaaaaacaattatagCAAGACAttgttttcatttcacttcaccaatttggactattttgtgtgtccattacatgaaatccaaataaaatccatttaaatgacaggttgtaatgcaacacaataggaaaaatgccaatgggGATGAATACCTTTGCAAGGCGCTGTAGGCACAGATCTAGCATCAGCTTCCCAATACACAATCCTAACCTTACTATTTGGGGATAAAACGCTAGAAGTGACCTTTGATTAGTGTCTAGGGGAAACATCATTGTACACCAAGCTCTCTGATTCGTGCATGTAGATAGTTATAGCAGAACTAAGGGAATTTGGGCTAATATTCCACAGGGAAAGCAGTAAGCAGCGCACTCCATACACCCAGTCCATGTGCTCCTGTACAAACCCAACCCCCCTAGCCCCCAGCCCCCTGTATCCGCATCCTCTCAGCCCAGAAGCTAAACCCTCAGCCCCCTGTGTTCCTATGCCCTTGTGCGACCCTGGATAGGTCACTTGACAGAGAATAGTTCAAGGGAAATTTCAAAAAGATTCAACTTCATCATCTCCAGAATCCCTCCAACATCAACAGTATATAAAATATGGAAAATGTTTGTTTACTAAATGTCTACTAATTgattgatgatgtcattggaaacacgtATCGTCCTCTATAAAATTGTGACATTTCCAATGAACCTGTGGTGTTGACATCGGCAGTAGTTCATGCATGTGGGAGTAACACTTCACTTTGGCACGGGGCTCTGCACAGACAGATAGGGTTTTACTACTGTAATGCCACAGTTCCATAGGATGGGACATGGCAGTAGTAGGTGACAGTTGTAACTATGGCAAGCCATTTTTAAATGCATTCCCTGGAACTGAGTCATGGTGATATGGAGATGACATACTGTAAACGTCTCTGGGTTAAACCATGCAGGAACATATTGTGTGTGTTATGATGATATGGAGATGACATACTGTAAACGTCTCTGGGTTAAACCATGCAGGAACATATTGTGTGTGTTATGGAGATGACATACTGTAAACGTCTCTGGGTTAAACCATGCAGGAACATATTGTGTGTGTTATGGAGATGACATACTGTAAACGTCTCTGGGTTAAACCATGCAGGAACATATTGTGTGTGTTATGATGATATGGAGATGACATACTGTAAACGTCTCTGGGTTAAACCATGCAGGAACATATTGTGTGTGTTATGGAGATGACATATTGTAAACGTCTCTGGGTTAAACCATGCAGGAACATATTGTGTGTGTTATGATGATATGGAGATGACATACTGTAAACGTCTCTGGGTTAAACCATGCAGGAACATATTGTGTGTGTTATGGAGATGACATACTGCAAACGTCTCTGGGTTAAACCATGCAGGAACATATTGTGTGTGTTATGGAGATGACATACTGTAAACGTCTCTGGGTTAAACCATGCAGGAACATATTGTGTGTGTTATGGAGATGACATACTGTAAACGTCTCTGGGTTAAACCATGCAGGAACATATTGTGTGTGTCATGGTGATATGGCAGACGTGAGTTTTTCTCTATCATCCAGAAGCAGGCTGTTAAAACAGCCTATTCATTACACATAAAACCAAAGAGTCACCATATTATCAATCAAATCTGCTCATTAATGAATATCAAATCACcatcaatatacagtgccttgcgaaa

Function

NR:

description
transposase

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1929051 True 3862 lncRNA 0.42 2 32864892 32868963

Neighbor

gene id symbol gene type direction distance location
LOC110499344 LOC106589763 coding upstream 1503 32849697 ~ 32863389 (+)
LOC110499341 LOC106589760 coding upstream 104845 32747591 ~ 32760047 (+)
LOC110499338 LOC106589757 coding upstream 128162 32702791 ~ 32736730 (+)
LOC110499339 LOC106589759 coding upstream 162367 32690087 ~ 32702525 (+)
LOC110499531 NA coding upstream 250959 32612958 ~ 32613933 (+)
LOC110499532 hpse2 coding downstream 194072 33063035 ~ 33132825 (+)
LOC118942060 LOC106589768 coding downstream 316101 33177293 ~ 33196167 (+)
LOC110499352 LOC106589767 coding downstream 347309 33216272 ~ 33262134 (+)
LOC110499354 NA coding downstream 605977 33474940 ~ 33517443 (+)
LOC118942063 NA coding downstream 659835 33528620 ~ 33530380 (+)
G1686518 NA non-coding upstream 17517 32847027 ~ 32847375 (+)
G1686386 NA non-coding upstream 23954 32840300 ~ 32840938 (+)
G1686402 NA non-coding upstream 25852 32838574 ~ 32839040 (+)
G1686395 NA non-coding upstream 36324 32828145 ~ 32828568 (+)
G1686391 NA non-coding upstream 43587 32821032 ~ 32821305 (+)
G1686563 NA non-coding downstream 85326 32954289 ~ 33058087 (+)
G1686566 NA non-coding downstream 91896 32960859 ~ 32965536 (+)
G1686571 NA non-coding downstream 92819 32961782 ~ 32962946 (+)
G1686567 NA non-coding downstream 113104 32982067 ~ 32993118 (+)
G1686579 NA non-coding downstream 140446 33009409 ~ 33016212 (+)
G1686317 LOC106589755 other upstream 203244 32654354 ~ 32661648 (+)
LOC110499316 LOC106589729 other upstream 3288334 29572397 ~ 29588171 (+)
lhcgr lhr other upstream 3406971 29437357 ~ 29458499 (+)
G1681792 NA other upstream 4086483 28778006 ~ 28778409 (+)
G1681180 NA other upstream 4138397 28717361 ~ 28726495 (+)
G1687675 NA other downstream 1456874 34325837 ~ 34326254 (+)
LOC110499396 LOC106589821 other downstream 2512746 35381609 ~ 35384567 (+)
G1689347 NA other downstream 2812404 35681367 ~ 35682437 (+)
LOC118942012 LOC106589797 other downstream 2832257 35701200 ~ 35702156 (+)

Expression


Co-expression Network