G1686636


Basic Information

Item Value
gene id G1686636
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 33167196 ~ 33169029 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1929187
TCCGCCACCAACTCAACaactctcccatttctctctcctccgaaTACTCCTtcttctcccagactggctctggttcacccccccccccccccaaatttgTGGCCTACCTCCCCGACTTAACTCCTCGTATCGTCGCCGTtcctctctcgctgcctccatCTGCTCCCTTGGACGGCGATACTCTCCGGCCTTCGTCCAGGGTCCTTCTCCATcaggatgtcctcccatgtccactcctcctggccacgctgcttggtccttttttggtgggatcttctgtcacgatcgttataatgattggaccaaggtACAGTGTGGTAGGCGTACATATTCCTTTAATAAATTAACaccgaacaaaaacaacaaactacCAAACGAAACATGAAGCTACTGGATTGCACAAAGGCAACtaactgtagacaagatcccacaaatacCATAtgaggaaatggctacctaaatatgatccccaatcagagacaacgataaacagctgcctctgattgggaaccatatcaggccaccatagaattACAAATTCCCCTAGATGACCCACGcaagtcactatcacgccccaaccaacacagagaataaacagcttactatggtcagggcatTACAAATATTGTAATctgattacagatacttttgaaaaactaggttattacttcttggattacttttaaattcagaaaggatgtttatGAAAATTGAGTGCAAAGTgcaaataggataattttggtcataaagtcagtctcgtctaaaACGGAGTTTAGAGTCTGAATGTGTCACAACGAGAAAATGAAGGTTAGTTTACAATTATGTCAAAAATTCATACCCCCGTTTGCCTATTAACACGTGGAGGCACCGTGTTTTCTGGGAAAAGACTGGGCTAGTTCGCTTTGCCCTGGTGGTAACCTAGTTGGCggaaaataaagaaaacaaataaCGGGAGAGGAAGATTTGAtccctgctagctaacgttagctaacgttagctagctagctcataaTCAAGCAAACCTGACATGTTTGATGCATTTCGCCAGCTTTCTTTCAATAATGTTTAAACTCAAACTGGCTAGCTACTGTCCTTGTAGGTTTTGATTGAATGGCAAAGACAGACCCAtgaaacacccacatcaaaccacacccccaacaCAACTCTCGTTTGCCTTCGCTCATGgccgctagcatttcttaatggaCATTGAtgaaaaacaaggccaaatcaggaagtgcaatTGACCTTTAAGTTTATTCCACCTGAGTGAATCTGAcaacaagtcagagaccactatgacagCATACCAAATGCAGTAACTGAAAGTGCAGATTATGTtagggtaatccaaaagttacgtgaCTGATAGAAATCTTGGACAGGTAAGTAGTAATGTAACGTAAAGTAAGCTACCCAAGCCTGTCCATGGACAGCAGAACGTATAGAAGCTACTTTAGAAGTCCTTTTCTGTCTGCAAATCTGCACTAAAATTCCTCAAGCCACTGTGTCTCTGACAGGGAAACAAACAGGTAAACAGGGAAACAAACAGGTAGTAAACACTTTCCCACCAGAGGCTGCTtggtgatgacagaggtgagccAGTCCAGGTCCAGGCACTTGTAGACcaccagggtaaccagggaggtgTGTCTGTACTCGCTGGGGGAAAGGGGAGCTCCCTCTGGGTACATCAAACGGACAGTGGTCCTGGAGCCTGCGTCCCTCTCAAACCCTGACACTGGGGCATTGTTCATCCTGAGAGGACAAAGAA
>TU1929186
AGTTTATTCCACCTGAGTGAATCTGAcaacaagtcagagaccactatgacagCATACCAAATGCAGTAACTGAAAGTGCAGATTATGTtagggtaatccaaaagttacgtgaCTGATAGAAATCTTGGACAGGTAAGTAGTAATGTAACGTAAAGTAAGCTACCCAAGCCTGTCCATGGACAGCAGAACGTATAGAAGCTACTTTAGAAGTCCTTTTCTGTCTGCAAATCTGCACTAAAATTCCTCAAGCCACTGTGTCTCTGACAGGGAAACAAACAGGTAAACAGGGAAACAAACAGGTAAACAGGGAAACAAACAGGTAAACAGGGAAACAAACAGGTAGTAAACACTTTCCCACCAGAGGCTGCTtggtgatgacagaggtgagccAGTCCAGGTCCAGGCACTTGTAGACcaccagggtaaccagggaggtgTGTCTGTACTCGCTGGGGGAAAGGGGAGCTCCCTCTGGGTACATCAAACGGACAGTGGTCCTGGAGCCTGCGTCCCTCTCAAACCCTGACACTGGGGCATTGTTCATCCTGAGAGGACAAAGAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1929187 False 1774 lncRNA 0.45 2 33167196 33169029
TU1929186 True 561 lncRNA 0.47 2 33168449 33169029

Neighbor

gene id symbol gene type direction distance location
LOC110499532 hpse2 coding upstream 34371 33063035 ~ 33132825 (+)
LOC110499344 LOC106589763 coding upstream 303807 32849697 ~ 32863389 (+)
LOC110499341 LOC106589760 coding upstream 407149 32747591 ~ 32760047 (+)
LOC110499338 LOC106589757 coding upstream 430466 32702791 ~ 32736730 (+)
LOC110499339 LOC106589759 coding upstream 464671 32690087 ~ 32702525 (+)
LOC118942060 LOC106589768 coding downstream 16035 33177293 ~ 33196167 (+)
LOC110499352 LOC106589767 coding downstream 47243 33216272 ~ 33262134 (+)
LOC110499354 NA coding downstream 305911 33474940 ~ 33517443 (+)
LOC118942063 NA coding downstream 359769 33528620 ~ 33530380 (+)
LOC110499362 LOC106589783 coding downstream 492292 33661321 ~ 33787514 (+)
G1686632 NA non-coding upstream 20105 33146738 ~ 33147091 (+)
G1686631 NA non-coding upstream 20480 33146479 ~ 33146716 (+)
G1686630 NA non-coding upstream 21995 33145000 ~ 33145201 (+)
G1686549 NA non-coding upstream 32999 33133911 ~ 33134197 (+)
G1686547 NA non-coding upstream 33343 33133387 ~ 33133853 (+)
G1686640 NA non-coding downstream 5013 33174042 ~ 33175013 (+)
G1686659 NA non-coding downstream 35259 33204288 ~ 33205058 (+)
G1686658 NA non-coding downstream 98789 33267818 ~ 33268441 (+)
G1686699 NA non-coding downstream 147989 33317018 ~ 33317263 (+)
G1686317 LOC106589755 other upstream 505548 32654354 ~ 32661648 (+)
LOC110499316 LOC106589729 other upstream 3590638 29572397 ~ 29588171 (+)
lhcgr lhr other upstream 3709275 29437357 ~ 29458499 (+)
G1681792 NA other upstream 4388787 28778006 ~ 28778409 (+)
G1681180 NA other upstream 4440701 28717361 ~ 28726495 (+)
G1687675 NA other downstream 1156808 34325837 ~ 34326254 (+)
LOC110499396 LOC106589821 other downstream 2212680 35381609 ~ 35384567 (+)
G1689347 NA other downstream 2512338 35681367 ~ 35682437 (+)
LOC118942012 LOC106589797 other downstream 2532191 35701200 ~ 35702156 (+)

Expression


Co-expression Network