G1686640


Basic Information

Item Value
gene id G1686640
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 33174042 ~ 33175013 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1929191
CTGCTGAGTAGCATCTCCCTGGTGTCAGGTGTAGGTCTCCTGTGTGTAACTGTAACAGCTGTTATCTCAGTGAAGTCAGCATCAGGCACCGGAGGAGAGCTGTAGTCATCTGGATCCTCCACACTAAGGTGTTTCAGAGTCACCATGCTAACCTGGGACTAGGGGCTCAGAGATGTTAGAGAAAGTCTGTAGACAGCAGTCGTCTGTGGTGTTCTTCTTCTGTCCTCCATGCTCTGGGGACGAACAAGAAGGCAAATTACTATAATCAGCTAAAATGGCTGCCACACTAAACTGAAGATGTCCCTAAccgctgatctaaggtcagttttgcgTTTGTACTACTTGTGGTAAACGTTTAGATTAAGGTGAGGGTGAGCTGATTCTACATCTGTGTCAGAG

Function

NR:

description
lactosylceramide alpha-2,3-sialyltransferase-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1929191 True 399 lncRNA 0.47 2 33174042 33175013

Neighbor

gene id symbol gene type direction distance location
LOC110499532 hpse2 coding upstream 41217 33063035 ~ 33132825 (+)
LOC110499344 LOC106589763 coding upstream 310653 32849697 ~ 32863389 (+)
LOC110499341 LOC106589760 coding upstream 413995 32747591 ~ 32760047 (+)
LOC110499338 LOC106589757 coding upstream 437312 32702791 ~ 32736730 (+)
LOC110499339 LOC106589759 coding upstream 471517 32690087 ~ 32702525 (+)
LOC118942060 LOC106589768 coding downstream 10051 33177293 ~ 33196167 (+)
LOC110499352 LOC106589767 coding downstream 41259 33216272 ~ 33262134 (+)
LOC110499354 NA coding downstream 299927 33474940 ~ 33517443 (+)
LOC118942063 NA coding downstream 353785 33528620 ~ 33530380 (+)
LOC110499362 LOC106589783 coding downstream 486308 33661321 ~ 33787514 (+)
G1686636 NA non-coding upstream 5013 33167196 ~ 33169029 (+)
G1686632 NA non-coding upstream 26951 33146738 ~ 33147091 (+)
G1686631 NA non-coding upstream 27326 33146479 ~ 33146716 (+)
G1686630 NA non-coding upstream 28841 33145000 ~ 33145201 (+)
G1686549 NA non-coding upstream 39845 33133911 ~ 33134197 (+)
G1686659 NA non-coding downstream 29275 33204288 ~ 33205058 (+)
G1686658 NA non-coding downstream 92805 33267818 ~ 33268441 (+)
G1686699 NA non-coding downstream 142005 33317018 ~ 33317263 (+)
G1686700 NA non-coding downstream 144782 33319795 ~ 33320009 (+)
G1686317 LOC106589755 other upstream 512394 32654354 ~ 32661648 (+)
LOC110499316 LOC106589729 other upstream 3597484 29572397 ~ 29588171 (+)
lhcgr lhr other upstream 3716121 29437357 ~ 29458499 (+)
G1681792 NA other upstream 4395633 28778006 ~ 28778409 (+)
G1681180 NA other upstream 4447547 28717361 ~ 28726495 (+)
G1687675 NA other downstream 1150824 34325837 ~ 34326254 (+)
LOC110499396 LOC106589821 other downstream 2206696 35381609 ~ 35384567 (+)
G1689347 NA other downstream 2506354 35681367 ~ 35682437 (+)
LOC118942012 LOC106589797 other downstream 2526207 35701200 ~ 35702156 (+)

Expression


Co-expression Network