G1686708


Basic Information

Item Value
gene id G1686708
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 33360489 ~ 33360959 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1929263
tttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccatcccagtctcagatcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccatgtccctgctgaagaaaagcaggcccaaaccatgatgctgccactaccatgtttgacagtggggatgatgtgttcagggtgatgagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcgattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacgacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacatctg

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1929263 True 471 lncRNA 0.42 1 33360489 33360959

Neighbor

gene id symbol gene type direction distance location
LOC110499352 LOC106589767 coding upstream 98355 33216272 ~ 33262134 (+)
LOC118942060 LOC106589768 coding upstream 164322 33177293 ~ 33196167 (+)
LOC110499532 hpse2 coding upstream 227664 33063035 ~ 33132825 (+)
LOC110499344 LOC106589763 coding upstream 497100 32849697 ~ 32863389 (+)
LOC110499341 LOC106589760 coding upstream 600442 32747591 ~ 32760047 (+)
LOC110499354 NA coding downstream 113981 33474940 ~ 33517443 (+)
LOC118942063 NA coding downstream 167839 33528620 ~ 33530380 (+)
LOC110499362 LOC106589783 coding downstream 300362 33661321 ~ 33787514 (+)
rab23 LOC106589799 coding downstream 588793 33949752 ~ 33958728 (+)
LOC110499368 LOC106589788 coding downstream 623507 33984466 ~ 34178931 (+)
G1686700 NA non-coding upstream 40480 33319795 ~ 33320009 (+)
G1686699 NA non-coding upstream 43226 33317018 ~ 33317263 (+)
G1686658 NA non-coding upstream 92048 33267818 ~ 33268441 (+)
G1686659 NA non-coding upstream 155431 33204288 ~ 33205058 (+)
G1686710 NA non-coding downstream 5823 33366782 ~ 33366998 (+)
G1686711 NA non-coding downstream 7629 33368588 ~ 33368832 (+)
G1686713 NA non-coding downstream 11082 33372041 ~ 33372575 (+)
G1686724 NA non-coding downstream 46227 33407186 ~ 33407585 (+)
G1686730 NA non-coding downstream 64895 33425854 ~ 33454646 (+)
G1686317 LOC106589755 other upstream 698841 32654354 ~ 32661648 (+)
LOC110499316 LOC106589729 other upstream 3783931 29572397 ~ 29588171 (+)
lhcgr lhr other upstream 3902568 29437357 ~ 29458499 (+)
G1681792 NA other upstream 4582080 28778006 ~ 28778409 (+)
G1687675 NA other downstream 964878 34325837 ~ 34326254 (+)
LOC110499396 LOC106589821 other downstream 2020750 35381609 ~ 35384567 (+)
G1689347 NA other downstream 2320408 35681367 ~ 35682437 (+)
LOC118942012 LOC106589797 other downstream 2340261 35701200 ~ 35702156 (+)
G1689671 NA other downstream 2520619 35881578 ~ 35881874 (+)

Expression


Co-expression Network