G1686760 (LOC106589782)



Basic Information


Item Value
gene id G1686760
gene name LOC106589782
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 33491588 ~ 33506057 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1929323
ACACTTCAATTTCATACCAAACAGTGATTTATTATGTATCAGAATCTGAAATTCACAATTATTCAGTCACAATGTGTAGAACATCTATTATCTAAATGAGTCAGACTCATTAATAAAACATTGATAACTTCATGTTCCATAGTTTGAGTATTGCTGTATCACATATTTTCTATCAGAATCTTCCTCCTACCTTGTGATCCTGTACAGCCTCATCTACAGGGATGCAGTCATGATTTTTATGTTTCCTTGAGACCTGACACACCAAACAGATGGGCTCtttatcctccagacagaacagaCTGAGTTTCTCACTGTGTAGACTGCAGAGCACCTTGGACCCTGTGGTTGGATCTGTCTGTCTCCTTTCCCGTAAGGCCTCACACAGGTTCAATAGAGAAAGGTTTATAAGGGGATGATCCTTAGACGATCGTCTCCTGCAAACTGGACATTCCCGAGATTCCTCGTCTTTCCAGCATTCCTTTAGACAGGCTTGGCAGAAGCTGTGGCTGCATGGCAAAATGACAGGATCCTTAAAGATGTCAAGGCACACCGTACAGGAGAAATCCTCCTCTGGGAGAGATGAACTAGAAGCCATTTTCTCACACGGTGTCACTCCCTGTTCTGGTATGAGATCTGAAAGTTAATTTCACTTTCACTTTTAAAACGTCCTCTCTTAAACGGACACGTTATTCAAAGCAAGTGAAGATGCATGTAAAGTTCACCGTCTTGATGATATTACCTTGTATTGGTTGGTTTAGCACCCTGATATTTCAGAACAATCTAAATAAAATCCCAGTGTTGTTGTGTG

Function


NR:

description
tripartite motif-containing protein 35-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU1929323 True 808 lncRNA 0.41 2 33491588 33506057

Neighbor


gene id symbol gene type direction distance location
LOC110499352 LOC106589767 coding upstream 229454 33216272 ~ 33262134 (+)
LOC118942060 LOC106589768 coding upstream 295421 33177293 ~ 33196167 (+)
LOC110499532 hpse2 coding upstream 358763 33063035 ~ 33132825 (+)
LOC110499344 LOC106589763 coding upstream 628199 32849697 ~ 32863389 (+)
LOC110499341 LOC106589760 coding upstream 731541 32747591 ~ 32760047 (+)
LOC118942063 NA coding downstream 22741 33528620 ~ 33530380 (+)
LOC110499362 LOC106589783 coding downstream 155264 33661321 ~ 33787514 (+)
rab23 LOC106589799 coding downstream 443695 33949752 ~ 33958728 (+)
LOC110499368 LOC106589788 coding downstream 478409 33984466 ~ 34178931 (+)
zmp:0000000760 LOC106589800 coding downstream 678023 34184080 ~ 34208986 (+)
G1686758 NA non-coding upstream 14441 33476617 ~ 33477147 (+)
G1686748 NA non-coding upstream 30784 33460602 ~ 33460804 (+)
G1686745 NA non-coding upstream 36665 33454699 ~ 33454923 (+)
G1686730 NA non-coding upstream 36942 33425854 ~ 33454646 (+)
G1686724 NA non-coding upstream 84003 33407186 ~ 33407585 (+)
G1686753 LOC106589781 non-coding downstream 27622 33533679 ~ 33559019 (+)
G1687114 NA non-coding downstream 99181 33605238 ~ 33605655 (+)
G1687142 NA non-coding downstream 119884 33625941 ~ 33626164 (+)
G1687156 NA non-coding downstream 131081 33637138 ~ 33637356 (+)
G1686317 LOC106589755 other upstream 829940 32654354 ~ 32661648 (+)
LOC110499316 LOC106589729 other upstream 3915030 29572397 ~ 29588171 (+)
lhcgr lhr other upstream 4033667 29437357 ~ 29458499 (+)
G1681792 NA other upstream 4713179 28778006 ~ 28778409 (+)
G1687675 NA other downstream 819780 34325837 ~ 34326254 (+)
LOC110499396 LOC106589821 other downstream 1875652 35381609 ~ 35384567 (+)
G1689347 NA other downstream 2175310 35681367 ~ 35682437 (+)
LOC118942012 LOC106589797 other downstream 2195163 35701200 ~ 35702156 (+)
G1689671 NA other downstream 2375521 35881578 ~ 35881874 (+)

Expression



Co-expression Network