G1687007 (LOC106589782)


Basic Information

Item Value
gene id G1687007
gene name LOC106589782
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 33531084 ~ 33544238 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1929637
TTACAGGAGAAGCTGAAGGTCTTTAATAAAGTTAAACAAACCTGTGATCAAACAGCAGTGCACATTAAGAGCCAGGCCCAGCACACAGAGAAGCAGATTAAGGAGGAGTTTGAGAAACTTCACCAGTTTCtacgagaggaagaggaggccagGATAGCTGCtctgaaagaggaagagaagcaGAAGAGTCAGAAGATGAAGGAGAAGATTGAGCAGATGAACAGAGAGATATCATCACTTTCAGACACAATCAGAGCCATAGAGGGGGAGCTGAAAGATGAAGACATCTCATTCCTGCAGAACTTCAAGACCATGAAGGTAAGGTAAGTGATCTGCTACTCGTCTCTCTTCTCTGTGGTTGTGAACCCAACCCCACAGACGTTCTGACTCCTGAATGTTATTCCAGAGCCCAGTGCACAATGCCAGATCCACAGCTGGTGTCAGTGGGGCTGATAGACGTGGCCAAACACCTGGGAAACCTGAAGTTCAGAGTCTGGGAGAAGATGAAGGAGATCATCAAACACAGTGAGTACTGGATAGGAGAGGACATGATCTAGAATAATGTAAGATAGATTTAATTAAGTACTCTATTTTAAGTAGTATTGTTAGTGTATGCTCTAAGGGGTTCAGCTCAGGTAAACACAGCTGGGAGGTGGAGGTTGGGGATCATCCTCACTGGAACCTGGGCGTGGCTAAAGAATCAGCTGACAGGAAGGGGGAGCGGCATGCATCACCAGAGTATGGAATCTGGGCCATACTGCAGAGGAGTGGTAAGTATACTAATGGAAAGGGAGAGACCCTCCTCCTGAAGAAGAAACCCCAGAGGATCAGAGTTCAGCTGGACTACGACCAGGGGGAGGTGTCCTTCTACGACTCCAAAGACATGACACTCATCTACACTCATAAATACACATTCACTGAGACTCTCCACCCGTACTTCTCTATTGGATCAGCTGTTGATGCCAAAAACACTGGTGTTCAGATCTGCCAATCAGAGGTGTCTCTGACAGTGATATCATCCCAAtgaggttatgtgtgtgtgtgtgttgttgttggtgaaATTActagattatgttataatactgttaTTGTATCAAATGGTTGTTTTCTGGAGTAGAATGGTGTTTTTAGAACACTCATCTGTGGTCTTCTGAGTTGGACCTCTGGGACTTAATGCTGACAGTAGATTTACCATCCATTCATGTGAGGGAGATTGCTCCGGTTTGACTGgaaggtaccagggagagatggctcgGGTATAGATACTTATGAGAGGAACCCTGTTTTGGGGACCAGACCCTGGTTTACTCACAATGAGAACAGtctttacagcagatactgtctgctgtgaattattaATTAATTTAATATGAATCCTAACCTTGTGGCCCATTCCACACATCTGTTGTTTATCATGTAGACTAAGGGG
>TU1929638
agaggaagagaagcaGAAGAGTCAGAAGATGAAGGAGAAGATTGAGCAGATGAACAGAGAGATATCATCACTTTCAGACACAATCAGAGCCATAGAGGGGGAGCTGAAAGATGAAGACATCTCATTCCTGCAGAACTTCAAGACCATGAAGGAAAGAGCCCAGTGCACAATGCCAGATCCACAGCTGGTGTCAGGGGGGCTGATAGACGTGGCCAAACACCTGGGAAACCTGAAgttccatacccaaacagttcgaactactaattttgaaaattactctctccagaaataagtctctcactgttgccacctgctaccgacccccctcagctcccagctgtgccctggacaccatttgtgaattgatctcccc

Function

NR:

description
PREDICTED: nuclear factor 7, brain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1929637 False 1429 lncRNA 0.45 4 33531084 33532916
TU1929638 True 373 TUCP 0.48 3 33543686 33544238

Neighbor

gene id symbol gene type direction distance location
LOC118942061 LOC106589782 coding downstream 10178 33517650 ~ 33520906 (-)
LOC118942062 LOC106589782 coding downstream 16473 33503010 ~ 33514611 (-)
LOC110499353 LOC106589782 coding downstream 31165 33489351 ~ 33499919 (-)
LOC110499355 LOC106589782 coding downstream 44826 33475694 ~ 33486258 (-)
LOC110499533 slit1 coding downstream 58483 33292275 ~ 33472601 (-)
LOC110499360 LOC106589782 coding upstream 4318 33524385 ~ 33544273 (-)
LOC110499361 LOC106589781 coding upstream 12903 33545819 ~ 33578200 (-)
LOC110499535 NA coding upstream 317144 33850060 ~ 33938490 (-)
bag2 bag2 coding upstream 436172 33969088 ~ 33971824 (-)
znf451 znf451 coding upstream 439226 33972142 ~ 33983890 (-)
G1687070 NA non-coding downstream 11309 33504882 ~ 33519775 (-)
G1687068 NA non-coding downstream 67800 33463039 ~ 33463284 (-)
G1687044 NA non-coding downstream 123195 33407604 ~ 33407889 (-)
G1687038 NA non-coding downstream 142472 33388284 ~ 33388612 (-)
G1687032 NA non-coding downstream 169161 33361724 ~ 33361923 (-)
G1687143 NA non-coding upstream 93078 33625994 ~ 33626216 (-)
G1687159 NA non-coding upstream 106641 33639557 ~ 33639948 (-)
G1687164 NA non-coding upstream 109644 33642560 ~ 33642795 (-)
G1687183 NA non-coding upstream 121224 33654140 ~ 33654477 (-)
G1687385 NA non-coding upstream 253181 33786097 ~ 33787474 (-)
G1686887 NA other downstream 453057 33077810 ~ 33078027 (-)
LOC110499342 LOC106589762 other downstream 718230 32810995 ~ 32812999 (-)
G1684920 NA other downstream 2118240 31407594 ~ 31412844 (-)
G1684661 NA other downstream 2417398 31111555 ~ 31113686 (-)
LOC110499315 LOC106589727 other downstream 3984767 29541315 ~ 29571033 (-)
LOC110499358 LOC106589782 other upstream 757 33530945 ~ 33535225 (-)
G1687007 LOC106589782 other upstream 10770 33531084 ~ 33544238 (-)
G1689130 NA other upstream 1726073 35258989 ~ 35259818 (-)
G1689131 NA other upstream 1726970 35259886 ~ 35260208 (-)
G1689461 NA other upstream 1945198 35478114 ~ 35480057 (-)
trnav-uac-22 NA coding upstream 588164 34132402 ~ 34132477 (-)
G1689556 NA other upstream 2099130 35643368 ~ 35643777 (-)
LOC110499416 dnah17 other upstream 2321462 35864651 ~ 35951415 (-)

Expression


Co-expression Network