G1687735


Basic Information

Item Value
gene id G1687735
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 34414763 ~ 34419287 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1930444
ccccaccaccattttattatgaaTGTGATTTCTTGTAAACCTGATGCAATGACAATTATTCCCATATCAATTACAAGCAGCTGAATGCCTGCATGCATACACTCTGTGAACTTCACATTGAATGATACACTTCCTATGTGATGTGAAAGATTGAGGTGTTGAAGTACTTAGTGACAGTAGGAGCCCTGTCTAATGAAAAGGCATGGTTCAAAAAAGTGTGGTTCAAATAGTCCAGAATCAGTGGAATGCAAAACACAAAAATAATGCTGTGCTCTATTCAACTCATGCTTATATATCACGTTGACTGTGAAATTGTCTTTAGCTTGTCAGAGGAATGGGTTGAATACTAACACATACAACCTGGCCCAAAAATGATTTTGTAGCTTAAACAGACTGAAATAAATACTTCACCTCATGGTGGTACTGTAGGATGCACTTCCCTGTAGCTCATACAACAAAGGATCAAAGGTAACAAAAACACAATGTCACATTTGTTTGGAAAAAGCAACTATATTTTTCAACCAACTTTGTCAGTGTTTGTACAGGTCAAATATTTGACAAACAATGTACATTTCCCTAAATTAGTCCCTCATAATACCACTGCATTTCCCACAACACCTGTCAAATCCAAGCATATTTTGCCAAGACATTGTTCCAAGAAAAATACTCCAGACACTGCAATGATGACAAAAGCGGCATTAGGTTTTGACAAACGAACTCATTCACCCAATCAGGCAATTTACGCACTGTAAATCCTGTACTCTGGATATGTTTTTCTGATATTGTGGCTAACAAATAGATTGTTTTCACTCTTTTGATCAGAGTTGTTATTGTGAAGACATCTTTAAAATGAAATGATTTAATGTGTTTTATATGGAAATGAAGCTACTGCATTATGAATTCCTCCTATTGTAGTTAACTTTTAGTCTCTCGTCACAGCCATCGAGCAGCTGATTGGTTCTGGGTTTAAAAAAAATGCGAATGGCTTTGATATATTATGAAGAATATAGATCTTTGATGTATTAAAGACCAAAAAGCATAACATATTAAAGCACTCTTAGACTTGAAGAGCAAATAAGATGTAACAAATTTGTGTTCAGTGTTTCCCCACACTAAAGtgtacaaacacactcacacacacacaaacacacacttttatCTTACATCTTTTAGTCTTGGACTGAAGACTTATCAacgtcaaggtactggagtgacGAGCCACCCTTTCGGTCTCTGCTTGGCCGGCTCCCCACTCGGATTCCCTGCCGCTGACCACTAATTCCCTTCTAGTTCTGTCTCCCCTACCACAAGGACCTTGGACTGtgcctcaggacaacctggcCTGCCAATTCCTGGCTGTCCCTGTcattggaggctgctgaagggaggacggttcataataatgtctggaacggagcaaatggaatggcatcaaacatgtgtttgatgtattttataccattccactaaatctgctccagccattaccatgaaccctgccaccaacctcctgtggtcccTGTTCACTTGGCCATGCTGCAGATCCGGTTCTGCTGTTTCTGACTGACACTGTGGGCCCCTGACTTGATTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1930444 True 1592 lncRNA 0.40 2 34414763 34419287

Neighbor

gene id symbol gene type direction distance location
hmgcll1 LOC106589805 coding upstream 35397 34347154 ~ 34379366 (+)
bmp5 LOC106589803 coding upstream 102613 34273867 ~ 34312150 (+)
col21a1 LOC106589801 coding upstream 143215 34225871 ~ 34271548 (+)
zmp:0000000760 LOC106589800 coding upstream 205777 34184080 ~ 34208986 (+)
LOC110499368 LOC106589788 coding upstream 235832 33984466 ~ 34178931 (+)
LOC118942064 NA coding downstream 79744 34499031 ~ 34503666 (+)
klhl31 LOC106589810 coding downstream 149768 34569055 ~ 34573880 (+)
gclc gsh1 coding downstream 164029 34583316 ~ 34591320 (+)
elovl5 LOC100192340 coding downstream 175670 34594957 ~ 34606103 (+)
LOC110499384 LOC106589811 coding downstream 196413 34615700 ~ 34626578 (+)
G1687732 NA non-coding upstream 3041 34411521 ~ 34411722 (+)
G1687731 NA non-coding upstream 3353 34411190 ~ 34411410 (+)
G1687730 NA non-coding upstream 3741 34410818 ~ 34411022 (+)
G1687681 NA non-coding upstream 82615 34331819 ~ 34332148 (+)
G1687845 NA non-coding downstream 207431 34626718 ~ 34683245 (+)
LOC110499597 NA non-coding downstream 265406 34684614 ~ 34685478 (+)
G1688405 NA non-coding downstream 323544 34742831 ~ 34743036 (+)
G1688410 NA non-coding downstream 327570 34746857 ~ 34747323 (+)
G1688414 NA non-coding downstream 330717 34750004 ~ 34750436 (+)
G1687675 NA other upstream 88509 34325837 ~ 34326254 (+)
LOC118942060 LOC106589768 other upstream 1229487 33177293 ~ 33196167 (+)
G1686317 LOC106589755 other upstream 1753115 32654354 ~ 32661648 (+)
LOC110499316 LOC106589729 other upstream 4838205 29572397 ~ 29588171 (+)
lhcgr lhr other upstream 4956842 29437357 ~ 29458499 (+)
LOC110499396 LOC106589821 other downstream 962422 35381609 ~ 35384567 (+)
G1689347 NA other downstream 1262080 35681367 ~ 35682437 (+)
LOC118942012 LOC106589797 other downstream 1281933 35701200 ~ 35702156 (+)
G1689671 NA other downstream 1462291 35881578 ~ 35881874 (+)
G1689732 LOC106612293 other downstream 1701329 36120616 ~ 36125390 (+)

Expression


Co-expression Network