G1688533


Basic Information

Item Value
gene id G1688533
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 34879206 ~ 34881587 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1931345
GTATTCATCAACAACCTACTGGGTATTCATCAACAACCTACTGGGTATTCATCAACAACCTACTGGGTATTCATCATGATGTCAGTTCTCTTTCTTTATTCATGGAGTTGTATGGCTGTTTATTCAATGCTATCTATTTCAAAAGCTGACCCCTGCTTGGTTGTTATGGAGGCAAAGTGTGGGAATTTATTGACCATCGACCACAGGTTGGCTACTGCAGTGATAATGTTAATGAATCAATACAGAGTGCTATCAGTGGCACAATTAAGGCTGTATTTCATGTTCCACACCAAGTTGTACCTCTGCAAGGGCAGCTCTACTGTCTGTCACTTCAAACTAGTGCATTAGTCTGTATTATCCTGACAAAATGAATCCCTGGTTGTGGATCTCATTAATGTTGCACTGGTGGGATAAACAGTGGTGAAAAACAAATAAGCGATTTATAGTGCCTTTGGTAATGAACCACAATGCACTTGCTTTTGACCTGCAAGTTATATTTGAGCTTATGATTATCAGTCATGCTAACAAATAAAAGATGATGAAAATATGCCAACACAGATGGTCCTGAACCCAAATGCCAACCTACAGTATTATAGTACAAACACAAAGTGCATTGGACCAGAATACAGATGTCTGAGGGTGTCCAGCATCAAACAAAtacagcagcatctggttgcaGCCTGAGCATGTTTTAGGCACATTTGATGTGCTCAAAGAGTGTCAACAAATTGGAGAGATGGCATGTCCCATCTGCAGACTGTCTATTTATTTGTGTGAAATGTGCTATGGTAGAGAGACAAAATGGTTACACCGTCTCAAGCTTATTGAACTACAACTACTGTAGCCCTTTCTGTTTTATTTGTCAACAAACATATGGTATAAATATGGTATAACATGTCCATCTTTTTCATAACAAAACGTTTTCATAAAATGCTGAATTTCCAGTGACCTCTTTAGCCTTCCATGTCCTTCACGGATTACTAATGTTCTGAGTAATGGTGTTTTGGCATAAAGTGATACATGTTTAACTAACAGAACAGAAAGTAATGTCTTCTACCAGACAACAGTATAATTAGTCTCATTCACCCAATATAATGGCTGTGGTTGGTAGAGTTCATgctaaatgttttttgttgtgtGCTTCAGTTTCTATTGCTGCTTATGGTTTCAGAGGTCTTCTGATTTTGTAATTTGATGGTaacatatttatcaaaatattgTCTCAGTAGCGTTGACAAAGCTTTGATGAGTCAGCATTTTTTTCAATCTTCATTTGTTTCAAAAAATTGTGTTCTTCTTACATATGAACAGACCTCCATGCTTTTAGTTCCATTGTTATTTATCAAGGTAGAGCTCTAGCCTATACAATTGTGGACTGTTTATATTTCTGACTTAACAGTTCTTAGAACAACAACATGCTTCTTAGAACAACAACATGCTTCTTAGAACAACAACATGCTTCTTAGAATAACAACATGCTTCTTAGAATAACAACATGCTTCTTAGAATAAAAACATGCTTCTTAGAACAACAACATGCTTCTTAGAACAACAACATGCTTCTTAGAACAACAACATGCTTCTTAGAATAACAACATGGGTCTTAGAAAACATCAACAGACATGAAATTGTGAGCAATGTTTTCCAGTGGCAGATAATCATACATTGCGCTAACCTTACAGCTACTCTCGTCTTTTATCTATGAGTGGTTTTGGATTGACACAAATGTCTGCCTGGGAGTATTAGCAACAAGCATATTTAATTGAAATCATTGCTTGACATCTACATGCAGAAACACTCTATTTACTTTAAGCTAATGATTCTTGGCAAAGAATGGCAGGATTTAACCTTGTTACTCTTTCATTGCAAAGCTTGTGAGGTTGAAAGGACAATGGCATAATCTCCTTTCATCAAAGATTCTACACCTCTTTGATGAGGTATAATGACTTGGTATAATCATACTGTGTGCAAGCGTTGTTGTGTGTGCTGTATTTCTCACCTTGGAGAACAGTTCTGAATAGTGATTGCAAGTTCTCTTTCTGCTCCAGGTAAGATTATGATTAAGGCCATTGGGTTTGGGTACCTTTTCAGTTTGGGTCCGTTAGTTAACAATACAAAATGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1931345 True 2122 lncRNA 0.37 2 34879206 34881587

Neighbor

gene id symbol gene type direction distance location
LOC110499597 NA coding upstream 193728 34684614 ~ 34685478 (+)
LOC110499390 LOC106589817 coding upstream 207776 34656043 ~ 34671430 (+)
LOC110499387 gsta3 coding upstream 248944 34627219 ~ 34630262 (+)
LOC110499384 LOC106589811 coding upstream 252628 34615700 ~ 34626578 (+)
elovl5 LOC100192340 coding upstream 273103 34594957 ~ 34606103 (+)
LOC110499393 LOC106589819 coding downstream 431024 35312611 ~ 35323282 (+)
LOC110499394 LOC106589820 coding downstream 456862 35338449 ~ 35374027 (+)
LOC110499396 LOC106589821 coding downstream 500022 35381609 ~ 35384567 (+)
LOC110499398 m4a15 coding downstream 528652 35410239 ~ 35417932 (+)
LOC110499400 LOC100194728 coding downstream 557393 35438980 ~ 35446541 (+)
G1688418 NA non-coding upstream 126304 34752442 ~ 34752902 (+)
G1688414 NA non-coding upstream 128770 34750004 ~ 34750436 (+)
G1688410 NA non-coding upstream 131883 34746857 ~ 34747323 (+)
G1688405 NA non-coding upstream 136170 34742831 ~ 34743036 (+)
G1688674 NA non-coding downstream 198316 35079903 ~ 35080125 (+)
G1688728 NA non-coding downstream 292171 35173758 ~ 35173985 (+)
G1688729 NA non-coding downstream 294120 35175707 ~ 35176286 (+)
G1689018 NA non-coding downstream 304432 35186019 ~ 35191028 (+)
G1689092 NA non-coding downstream 351614 35233201 ~ 35233536 (+)
G1687675 NA other upstream 552952 34325837 ~ 34326254 (+)
LOC118942060 LOC106589768 other upstream 1693930 33177293 ~ 33196167 (+)
G1686317 LOC106589755 other upstream 2217558 32654354 ~ 32661648 (+)
LOC110499316 LOC106589729 other upstream 5302648 29572397 ~ 29588171 (+)
lhcgr lhr other upstream 5421285 29437357 ~ 29458499 (+)
G1689347 NA other downstream 799780 35681367 ~ 35682437 (+)
LOC118942012 LOC106589797 other downstream 819633 35701200 ~ 35702156 (+)
G1689671 NA other downstream 999991 35881578 ~ 35881874 (+)
G1689732 LOC106612293 other downstream 1239029 36120616 ~ 36125390 (+)

Expression


Co-expression Network