G1689174


Basic Information

Item Value
gene id G1689174
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 35375600 ~ 35378074 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1932020
agcagccctcccttcagcagcctctaCTGGTCTGCATCAATCTATAACTTTCAGGTTGGTTCATAaggttagacatactgtagtgtacAATATTTATTTTCTGTAGCTTACAGTTCAATATTATTTTCTTTATAAAATCTAGTGCGCATTATGTTGGATGCTTTTGATAGTTTTGGCAATTTCTAACATAATATTCTACTTTTGTTTTGGGGAGGGGTACTGAAACAGACCCATTTTCAATTGTTATATTTCTTGTGTAAATGTGACTTAAGTTATTGtatcaaacaaatgtatttattgtttCTACATTATCCATTATGTTTGTGTATTAATGTATGTTTATGTcagtatgttttatttttttaatacatgACAGATTTAAGGGTTTTTACCTGATCTGGAGTGCACTATGTGATCTGGAGTGCACTAGGTAAATTACTTTTTAGAGGGACGTATTTGTTTTAGTAGCAGATACATTGGTATGCATTTATTAGCATTATATATCAACAAAGATTAATCTTAAAACATTATGGAACCAATATGAGTGGATTGATTTAGTGTTCATATGTTAAACACAGCATAAAACACATACAgtcgaagtcagaagtttacatacacttaggttggagtcattaaaactcgtatttcaaccactccacacatttcttgttaacaaactatagatttggcaagtcggttaggacatctactttgtgcatgacacaagtaattttcccaacaattgtttagacagattatttcacttataattaactgtatcacaattccagtgggtcagaagtttacatacacaaagttgactgtgcctttaaacagcatcatggaaaattccagataatgctgtcatggctttagaagcttctgataggctaattgacatagtttgagtcaatttgaggtgtgcctgtggatgtattcaaggcctaccttcaaactcagtgcctctgcttgacatcatgagaaaagcaaaagaaatcagccaagacctcagaaaaaacattgtagacctccacaagtctggttcatccttgggagcaatttccaaacgcttgaaggtaccacgtttatctgtataAACAatggtatgcaagtataaacactaagggatcacgcagccatcataccgctcgggaaggagacacgttctgtctcctagagaaaaatagaactgtttggccataatgaccatcgttatgtttggaggaaaaatggggatacttccaaagttgtgtcaaaatggcttaaggacaacaaagtcaaggtattggagtgtccatcacaaagccctgacctcaatcctatagaaaatttgtgggcagaactgaaaaagtgtgtgcgagcaaggaggccttacaaacctgactcagttacaccagctctgtcagaaggaatgggccaaaattcccccaacttattgtgggatgcttgtggaaggcacccgaaacgtttgacccaagttaatgaattgaaaggcaatgctaccaattacgaattgagtgaatgtaaacttctgacccactgggaatgtgatgaaagaaataaaagctgaaataactcattctcactattattctgacatttcacattattaaaaataaagtggtgatcctaactgacctaagacagggaattttgactcttattaaatatcaggaattgtgaacaactgagtttaaatgtatttgcctaaggtgtatgtaaacttccgacttcaactgtacagtagAATGCCACCTTGGATGCCTTTATGTTTATGATTTAGTTGCAAATCAAGTCGTAAAGAAGCTGTGTGAAACAAACACCAGAAATCCCAACAGTGTTTTCAGTGGACCAACACAATGACATATTATAGAATTACAGGTTGAAAGTACACAAGATTCGGGAATGGTTTATCATTCAACTTAAGTACACAATGGAGCTTTAGTTGCTCCATAATATTAAGAATACGGGATAATATGACAAAACAGGTTCCACAGGATAAATACCACACACTTACCTTTAGAACATTTTCATAATTTCTAGAATATTTTCATAAATTTGACAGTACAACATGTAAAAAGCATTACAGCCTAATGAACACTGAGCCTTGACAATTTCTGCTTTCACAAAGCTTAATTGAATAACTACTAAAATACAATATTAGAATCATCGAATCACACAATAGATAACCTTGATCAATGACTCGCCTTGTGCTGCTGTGGCTTTTATATAGATCTGCATACTGAAGGTTCTTCTGAGAAGATATTTATTCAAAGAGTCTCCTGTTCTGTGTTGTTCAGTCACTAAGCCCTCAAGTGAGGACACACTATTGTCTGAAAACCCCTGTAAAGTAAGTAGCTAAAAAGTAACATTGTGAAACTCGTGCTAGTAggactgtacatactgtataggtTACTTAACTATGTTCCTTGTATTGGCAGTGCATGCCAAAACTTTACAAATAAATCAAGTGGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1932020 True 2475 lncRNA 0.36 1 35375600 35378074

Neighbor

gene id symbol gene type direction distance location
LOC110499394 LOC106589820 coding upstream 1573 35338449 ~ 35374027 (+)
LOC110499393 LOC106589819 coding upstream 52318 35312611 ~ 35323282 (+)
LOC110499391 LOC106589815 coding upstream 196208 34766769 ~ 35179392 (+)
LOC110499597 NA coding upstream 690122 34684614 ~ 34685478 (+)
LOC110499390 LOC106589817 coding upstream 704170 34656043 ~ 34671430 (+)
LOC110499396 LOC106589821 coding downstream 3535 35381609 ~ 35384567 (+)
LOC110499398 m4a15 coding downstream 32165 35410239 ~ 35417932 (+)
LOC110499400 LOC100194728 coding downstream 60906 35438980 ~ 35446541 (+)
kifbp kif1bp coding downstream 87561 35465635 ~ 35468940 (+)
LOC110499404 srgn coding downstream 95546 35473620 ~ 35479099 (+)
G1689192 NA non-coding upstream 44712 35330614 ~ 35330888 (+)
G1689183 NA non-coding upstream 66666 35307182 ~ 35308934 (+)
G1689152 NA non-coding upstream 103111 35272246 ~ 35272489 (+)
G1689132 NA non-coding upstream 114659 35260714 ~ 35260941 (+)
G1689124 NA non-coding upstream 120352 35254999 ~ 35255248 (+)
G1689214 NA non-coding downstream 8191 35386265 ~ 35386597 (+)
G1689215 NA non-coding downstream 9462 35387536 ~ 35387836 (+)
G1689229 NA non-coding downstream 22630 35400704 ~ 35405614 (+)
G1689237 NA non-coding downstream 37738 35415812 ~ 35416726 (+)
G1687675 NA other upstream 1049346 34325837 ~ 34326254 (+)
LOC118942060 LOC106589768 other upstream 2190324 33177293 ~ 33196167 (+)
G1686317 LOC106589755 other upstream 2713952 32654354 ~ 32661648 (+)
LOC110499316 LOC106589729 other upstream 5799042 29572397 ~ 29588171 (+)
lhcgr lhr other upstream 5917679 29437357 ~ 29458499 (+)
G1689347 NA other downstream 303293 35681367 ~ 35682437 (+)
LOC118942012 LOC106589797 other downstream 323146 35701200 ~ 35702156 (+)
G1689671 NA other downstream 503504 35881578 ~ 35881874 (+)
G1689732 LOC106612293 other downstream 742542 36120616 ~ 36125390 (+)

Expression


Co-expression Network