G1689218


Basic Information

Item Value
gene id G1689218
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 35418048 ~ 35420255 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1932067
ccaaaaacagtgttaaagaaatcaaaatattttagattttagattcttcaaagtagccaccctttgacttcatgacagctttgcacacttttggcattctctcaaccagcttcacctggaatgcttttccaacagtcttgaaggcgttcccacatatgctgagcacttgttggctgcttttccttcactctgtggtccaactcatccaaaaccatctcaattgggttgaagttgggtggttgtagaggccaggtcatctgatgcagcactcaatcattctccttcttggtcaaatagcccttacacagcctggaggtgtgctgggctcccaagtggtgcagtattctaaggcactgcatctcagtgcttgaggcatcactacagaccctggttcgattccaggctgtatcacaactggttgtgactgggagtcccatagggacaCAATTGGCACACAATTGGTCcaccgtcgtccgggttagggtttggacggggtaggtcatcattgtaaataagaatttgttcttaactaacttgactagttaaataaaggtgtacacAATCCTATTGAAAACAGATGAtggtcccactaagtgcaaaccagatgagatggtgtatcgctgcagaatgctgtggtggccatgctggttaagtgtgccttgaattctaaataaatcactgacagtgtcaccagcaaagcatcccgacaccatcacacctcctcctccatgcttcatggtgggaaccacacatatggagatcatccgttcacctacaccacgtctcacaaagacacggcggttggaaccaaaaatcttaaatttggactcatcagaccaaaggacagatttccacctctctaatgtccattgctcgtgtttcttggcccaatcaagtatcttcttgttattggtgtcctttagtagtggtttctttgcagcaattaaaccatgaaggcccgattcacacagtctcttctgaacagttgatgttgagatgtgtctgttacttgaactctgtgaagcatttatttgggctgcaatttctgaggctggtaactctaatgaacgtatcctctgccgcaggggtaactctgggtcttcctttcctgtggtggtcctcatgagagccagtttcatcatagagcttcatggtttttgcgactgcacttgaagaaactttcaaagttcttgacattttccatattgactgaccttcatgtcttaaagtaatgatggactgtcgtttctctttgcttttgagctgttcttgccataatatagacttttaccaaatagggctatcttctgtataccacccctaccttgtcataacacaactgattggctcatatgcattaagaaggaaagaaattccacaaatgaacttttaacaaggcacacctgctaattgaaatgcattccaggtgactacctcatgaagctggttgagagaatgccaagagtgtgcaaagctgtcatcaaggcaaacactgtctgttttggttactacatgattccatatgtgttattccatagttttgatgtctccacaattattctacaatgaagaaaatagtgtTTTTTTAATATGTAAAAAAactggaatgagttggtgtttccaaacttttgactggtactgtaaattgcTCAATTAGGGCCTATGTATAAGAAAATATTCAAAAACACATCTTTGTATTTTCAAAATATACTTCACTTTCAAAATTAAACAACATCCATGTAGTGCAATAGAAAATGAACATGATCATTATAGAGGGGTTATTTGTTTAGCAAAAACACAGACGCATGAGCagctatggggcaaaacagacggggttgacttagattgttgacaacatgtaagctATATTTTactctccaatgtttattgaaaacataaatacatttgcacaatgagcacttgctGTCTCTCAAatcattgttacagttgttggttagcaaGCTAATGATGtttagccatattagcattgacatgaaatcgaTGCCTCTCTTTGTTCAGGCAGTGCTCGGAGGTCGACGTctccggtcttctagccatctccgatccatttttcattttccatttgtcttgtcttgttttcccacacacctggttctcatttccctcattatgtgttgtgtatttaaccctctgtttaccccatgtctttgtgtggtattgtttattCTGTTCCATGACTGTTGCGCT

Function

NR:

description
Transposable element Tc1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1932067 True 2208 lncRNA 0.41 1 35418048 35420255

Neighbor

gene id symbol gene type direction distance location
LOC110499398 m4a15 coding upstream 116 35410239 ~ 35417932 (+)
LOC110499396 LOC106589821 coding upstream 33481 35381609 ~ 35384567 (+)
LOC110499394 LOC106589820 coding upstream 44021 35338449 ~ 35374027 (+)
LOC110499393 LOC106589819 coding upstream 94766 35312611 ~ 35323282 (+)
LOC110499391 LOC106589815 coding upstream 238656 34766769 ~ 35179392 (+)
LOC110499400 LOC100194728 coding downstream 18725 35438980 ~ 35446541 (+)
kifbp kif1bp coding downstream 45380 35465635 ~ 35468940 (+)
LOC110499404 srgn coding downstream 53365 35473620 ~ 35479099 (+)
LOC110499405 LOC106589824 coding downstream 72359 35492614 ~ 35498474 (+)
LOC110499406 LOC106589826 coding downstream 80524 35500779 ~ 35508659 (+)
G1689237 NA non-coding upstream 1322 35415812 ~ 35416726 (+)
G1689229 NA non-coding upstream 12434 35400704 ~ 35405614 (+)
G1689215 NA non-coding upstream 30212 35387536 ~ 35387836 (+)
G1689214 NA non-coding upstream 31451 35386265 ~ 35386597 (+)
G1689245 NA non-coding downstream 14264 35434519 ~ 35515390 (+)
G1689303 NA non-coding downstream 130390 35550645 ~ 35551201 (+)
G1689337 NA non-coding downstream 197195 35617450 ~ 35617666 (+)
G1689342 NA non-coding downstream 222662 35642917 ~ 35643832 (+)
G1689299 NA non-coding downstream 224549 35644804 ~ 35645180 (+)
G1687675 NA other upstream 1091794 34325837 ~ 34326254 (+)
LOC118942060 LOC106589768 other upstream 2232772 33177293 ~ 33196167 (+)
G1686317 LOC106589755 other upstream 2756400 32654354 ~ 32661648 (+)
LOC110499316 LOC106589729 other upstream 5841490 29572397 ~ 29588171 (+)
G1689347 NA other downstream 261112 35681367 ~ 35682437 (+)
LOC118942012 LOC106589797 other downstream 280965 35701200 ~ 35702156 (+)
G1689671 NA other downstream 461323 35881578 ~ 35881874 (+)
G1689732 LOC106612293 other downstream 700361 36120616 ~ 36125390 (+)
G1690092 NA other downstream 844405 36264660 ~ 36264981 (+)

Expression


Co-expression Network