G1689736 (LOC106589843)


Basic Information

Item Value
gene id G1689736
gene name LOC106589843
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 36047198 ~ 36050269 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1932676
ACTGTTCTTGTAACAATGGTTCCTTTCCAGCGTTTTTGACCAATGGATACGTCAGGCAGTCCAGTTCCTCTTTAGAAAAAGTTCATGAAAAAACCCTCAACCAGTACTTTCGCTCATCCTTTTTAAAACGGTTACTGATCTTTTTGTTTTGTAATATTCCAGAGTGCTTTATAAAACTCTTCCCCGCATGCTTACAGCCGCAAACTTGAAGCAGAGAGCTTGTGTGCTTGTTGAAAGGACGTGACATCACCCTGCAGGAAGTACATCATTAGCGCATCGTCACCGTCACACCCCTGGATGCTTGAGCTGATTTGTTTGGTCTGTCCAGTCCAGCCCAGGCCATATAGTGGCTCGGAGAGCCTCAGTCGTGTCTACCAGGCCAACTAGCTTTAAGACAAACATGAAACCTGCTCATATGGGGTTATTACTCATATGGCAATAACTCACGTGTCATGATTCGTATATTAATAACTAGAAAATAAAAGGAGACAGTCTCTTAGTCTTTCAGACGGAAGAATTTAATCCGAGGGGAAGCCTGAcaggaggagggaaggggtgTGGATCCCCTTTCCAGTGAGATGGGCATAGAGAAAAGGAACAGAGAAGGTCTATAAACGGAGGAGGCTTACAGTTACCCCTACATCCTGATCTAGGGTCAGTCTCTGTCATTTGACCCTATGatgtttaaggttaggattgggggggGCGCGGGTAAACTGATTGTAGACCTGTGTCTACGATCAGGGCAACTTCTACACAGAGCGAAATCCCAACACCCCCAAAGTGCATGGAGggagtcccacacacacacacagaagagaacctggaagcatgagtgtgtgtgttcaagcTGTACAGTACATTCCTGAACTcagcaaggagaggagacaaaagTGCTGCAACAAAACCAGAGCTTTAACAGTAATAAACCATCCTTCTCTTCACACATCCATCAGATACCCCATGTCCAACAGACAGAAAATAATCAGAACAGTAATAACAATATTATAAGGCTAATCGATCTCACTACGACAGGGAGGGAGATGTCGCTAAAACATTTTAGTTGAGCCGAAATGCTTCAGCGTCAACAGTtgctgcacaaacacacatataatcatcatacagtaacactgtctgtctgtctgacgaaGAAAACATAGAAAACTAATATATCAACCCTGCCCCCGAGTGTGGTGTGTGCGTAAATGCGTCTGAGTTGTAACATGGTGCTAAGCAGAGGATTGTCCGTATAACCAGTAGAAGTGTACTTCTGTGTGTGTAGCGGTATACATGTTCCGAATGTGTGTATCTCTGTAAGTGCatctaattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttaactagtAGCGCAGTGCTAACCGGAGACCTAATTGCTTGTAGAAATGTGTGTGTTAACTGGTGACATAGTGCTTGGTGGAGGGCTGCCCATACAGCCCATAGAAGTCTGTGTGTCGGTGCGTCTGCTGTGCGTCTATCCAGTCTCTGACAGCAAGCCCTTGCATGGCTGGAGCTCCAGAGGCTAGGCCAGGGGGATGGGGATAGTCCTGGGCGCTTACCCAGGGAAAGGAGCCTGAACGTGGGTAGGGCGGGTGGCCGCGGTGCCCCGACACGGAGGGTACCCCGGAGCAGTAGCAGTTATCCATGGTACACACCAGGATCTTACGCCCGCCATACTGGGGGAGCACAGCCTGCTGGGAAGAATGGGAGGAGCTACTGCCGGCAGGGGGGAAGTGAGAGGGACCGAACACAGACCCTGAATGGTGATTGGTCAGAGAGCCACTTCCACTTCCTGTTCCGCCACCTTCGTTCATGTGGGAGGGGCCACAGGGACCCAGAGGCTGCTGATTCGAGGATTGGCCCTCTCCGGGGGCGGAGTTTGGGCCCTGGTAGGGCTGCttagaggaggaagatgaggagtcCTTGAACCCGGAAGCAGTGTTTTTCCCGTTGCCTTCTGGGAATGCCGAGGAGTGTTTGCGTTTCTCCACCCCCGATCCAAGGCCGCTGGGAGACGCAGGGACGGACTGGAGGAATgaggagggaggggttaggggggctggagggggggggggggggtgagagaggtagaggaagaggaaagagaagaggggatCAGAATTACCTTGATCCACTAAGACAAACCAGATAAGGCTGTGATGGTTCTGTAAAGATAATTCTCTCAATCCTACCTTCCATTGTTTTCCGTAGGCTCTTCTCTCTTTTGGAGAGTTCTGACAGGAACAGCTTAGAGTTGAGACTTCCCACCTTGTAGGGAGGGAGTGCACTGCCCACGCACCCTTGAGAcctgcaacacacacacacacacacacacacacacacacacaaatatgaatGTAACAAGCCTGGTATCTTAGCGCTCCATTAAAAGTATAGTTGCGGGACCGGAGTCTAGATGAGTGGTTAACACTCTTGACTCCGGGACCATACGATTCCCCCTGTGGCGAGGATCCCAGTTCAATCCTTGAATGAGCCCTGCGCATTTCTGCTGCTACTGCTCATATCCTGTAATAAAAACATATAAGGAGTCTGGAACTTCACCACACCTCCCACTACTGTACCTATAGTTGCAATGTGTGTAACAAGCATGACCATTCTAATATGATTACAGTGTTAAAGTGTGTAATCTCCTTTTTGTATCTGTAATAACATGTTTGCAATGGTCCTGTCTCTCACCGCTCCATGAGGACCTGGACAGGCTTGGTGTTCTTCATGAAGCCCAGCTCCTCAGATTTGCCAAAGGCCGTGTGGACTGAGCTGAGCAGCTTCTGGGCCTCGTGTCTCTGTTCTCCCAAAGCTAGAACCTGGCCCGCGTTTTCCTGGCAGAACCTAGAACGCGCCCGCTCTAGAACCTCCAGCGTACGGGACAAGTCTTCTTCCAAGAAGTGCTGCATCCGCAGATACTGCACACGCACCTCCTCTTTCAGCTCACAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1932676 True 3044 lncRNA 0.50 2 36047198 36050269

Neighbor

gene id symbol gene type direction distance location
LOC110499422 arl3 coding upstream 1121 36037722 ~ 36046077 (+)
LOC110499421 LOC106612362 coding upstream 18952 36021099 ~ 36028246 (+)
LOC118942065 NA coding upstream 71778 35971224 ~ 35975420 (+)
LOC118942471 NA coding upstream 162965 35884180 ~ 35884233 (+)
LOC110499417 LOC106589835 coding upstream 180349 35837323 ~ 35866849 (+)
LOC110499426 LOC106589844 coding downstream 75234 36125503 ~ 36157782 (+)
LOC110499428 LOC106589848 coding downstream 110934 36161203 ~ 36170899 (+)
mrpl27 LOC106589850 coding downstream 122919 36173188 ~ 36179601 (+)
LOC110499432 LOC106589856 coding downstream 157109 36207378 ~ 36247512 (+)
LOC118942466 NA coding downstream 373477 36423746 ~ 36423861 (+)
G1689758 NA non-coding upstream 47136 35998695 ~ 36000062 (+)
G1689676 NA non-coding upstream 157371 35889601 ~ 35889827 (+)
G1689672 NA non-coding upstream 163259 35883568 ~ 35883939 (+)
G1689598 NA non-coding upstream 166685 35880085 ~ 35880513 (+)
G1689615 NA non-coding upstream 285986 35760988 ~ 35761212 (+)
G1689783 NA non-coding downstream 1879 36052148 ~ 36053007 (+)
G1689737 NA non-coding downstream 4946 36055215 ~ 36061876 (+)
G1689809 NA non-coding downstream 50273 36100542 ~ 36102150 (+)
G1689817 NA non-coding downstream 64909 36115178 ~ 36115479 (+)
G1689818 NA non-coding downstream 65320 36115589 ~ 36115868 (+)
G1689671 NA other upstream 165324 35881578 ~ 35881874 (+)
LOC118942012 LOC106589797 other upstream 345059 35701200 ~ 35702156 (+)
G1689347 NA other upstream 364761 35681367 ~ 35682437 (+)
LOC110499396 LOC106589821 other upstream 662632 35381609 ~ 35384567 (+)
G1687675 NA other upstream 1720944 34325837 ~ 34326254 (+)
G1689732 LOC106612293 other downstream 70347 36120616 ~ 36125390 (+)
G1690092 NA other downstream 214391 36264660 ~ 36264981 (+)
G1690099 NA other downstream 225213 36275482 ~ 36275943 (+)
G1690116 NA other downstream 254670 36304939 ~ 36312698 (+)
G1690753 NA other downstream 827782 36878051 ~ 36880738 (+)

Expression


Co-expression Network