G1689737


Basic Information

Item Value
gene id G1689737
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 36055215 ~ 36061876 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1932678
cttcatgagagccagtttcatcatagcgcttgatggtttttgcgactgcacttgaagaaacgttcaaagttcttgcaattttccagattgactgacattcatgtcttattgtaatgatggactgtcctttctctttgcttatttgagctgttcttgctataatatgtacttggtcttttaccaaatagggctatcttctgtataccacccctaccttgtcacaacacaactgattggctcaaataaggaaagaaattccacaaattaacttttaacaaaggcacacctgttaattgaaatgcattccaggtgactatctcatggagctggttgagatcATGccaagctgttatcaaggcaaagggtggctactttaaagaatctcaaatatatattgatttgttgaataattttttggttactacaagattccatatgtgttatttcatagttttgatgtcgtcgctattatttcacaatgtagaaaatagtaaaaataaagaaaaaccctggaatgagtaggtgtgtccaaaacttttgactggtactctgtgtatggATAGATGACAGATAGATCAtagatatacacacatacatacatacacacagagagagagtttgagaaaTCAGACGTACCTCTACCACACACTTGTCAGAGTCCAGTTTACAGAGCTGCTCATCGATGTCCTGaactctctcctccaccctctcctgctGCCGCAATAGATTTTGCTGTGgaaaggggagaagggggagggagagagcgatgagatagagagagcgaaagTGGGAGAGAACGAGAAATGGTAAGTTCATAGTTTGGTTCGATAACTCTGAACAAATCAATATGATGAGTGAAGACAAACTCCACCAGCCCACTACCAAGCCTCCAGCAGACTGAGCCAGCTAATTTAGGCTCCATCTAACAAACACGCCATTTAAGGGGAGGAAGGGGGCTGTCATGGCAACCAATATATATTTTATGGTTGCATGTGTGTGAGGTATGAAGGGATGAACTGGGGGGATAGCCAGATAATggactatttaaaaaaataatttaagaacaaattattatttacaatgacggcctaccccggatgacgctaggctaattgtgcaccgccctatgggactcccaaacacggccggatgtgatgcagcctggatttgaaccaggtactgcagtgaagcctcttgcactgagatgcagtgccttagaccactgcgccactcgggagctcttTGTTTAAGCTTGGACACCTGTTTGCTGCGCAGCCTGCACGACTCAGGAGAGAGGGTGCGCACTGCAGCAGGGCGGGGGATGGGCAGGGACTGGTGGTATGTTGacatgggagggagagaaaaagtagCCACTGACTCATGATAGTTAGACAAACTTATAAATGCCATAGGTTAATCTATCATCCCATTTGTCAGCAGtataccaccctgtatcccactgctggcttgccttggaagataagcagggttggtccctggatgggagaccagaggCTGctagaagtggtgttggagggccagtaggaggcactcttacCTCTGGGCTAAAAAACAAATCTCAATGCCCcaaggcagtgattggggacattgccctgtgtaaggtgctgtcttttggatggaatgttaaaattaggtgttCTGACTCTGtggatcccatggcacttattgtagggGTGGTGTCGTGGTTAAATTCCTAATCTGACCATCATGGCCATGTAATCatttccaattggctcattcaccctTTTCCCTGTTAGTATTCTCCAGGTTGTTGTTGTAAAAGAGAACgtgttcagtcaacttacctggttaaaaaaatatGTGGCTGTCTTtactaatccatgcttttgtcacttctaggttagactactgcaatgctctactttccggctacccggataaagcactaaataaacttcagttcgtgctaaatacggctgctagaatcctgactagaaccaaaaaatgtgatcatattactccagtgctagcctccctacactggcttcctgtcaaggcaaggggctgatttcaaggttttactgctaacctacaaagcattacatgggcttgctcctacccatctctctgatttggtcctgccgtacatacctacacgtacgctacggtcacaagacgcaggcctcctaattgtccctagaatttctaagcaaacagctggaggcagggctttctcctatagagctccgtttttatggaatggtctgcctacccatgtaagagacgcaaactcggtctcaacctttaagtctttactgaagattcatctcttcagtgggtcatatgattgagtgtagtctggcccaggagtgggaaggtgaacggaaaagctctggagcaacgaaccgcccttgctgtctctgcctggccggttcccctctttccactgggattctctgcctctaaccctattacaggggctgagtcactggcttactggggctctttcataccgtccctaggaggggtgcgtcacttgagtgggttgagtcactgatgtgatcttactgtctgggttggcgcccccccttgggttgtgccgtggcggagatctttgtgggctatactcggccttgtctcaggatggtaagttggtggttgaagatgtccctctagtggtgtgggggctgtgctttggcaaagtgggtggggttatatccatcctgtttgaccctgtccgggggtgtcctcggatggggccacagtgtctcctgacccctcccgtctcagcctccagtatttatgctgcagtagtttatgtgtcggggggctagggtcagtttgttatatctggagtacttctcctgtcctattcagtgtcctgtgtgaatttaagtgtgctctctctaattctctctctctctctctctctctctctctcggaggacctgagccctaggaccatgcctcaggactacctgacgtgatacctccttgctgtccccagttcacctggccgtgctgctgctccagtttcaactgttatgccttattattattggaccatgctggtcatttatgaatatttgaaaatcttggccatgttctgttataatctccacccggcacagccagaagaggactggccacccctcatagcctggttcctctctaggtttcttcctaggttttggcctttctagggagtttttcctagccaccgtgcttctacacctgcattgcttgctgtttggggttttaaggttgggtttctgtacagcactttgagatatcagctgatgtacgaaaggctatataaatacatttgatttgatttgatttactgtatCAAATCAATGTAAAGAAGCTAAGGTTAGCTAGTTGAGGATATTTTGACAACTCCATTCGGATTAAACAGACTACCTGTCGGTTGCTCGTTGTAGTCTAATCCTCATTTAGCCAATTTAATTCCGTCATTTTAATTATATTTTACACTGATTTAGAGATCTCCCACGTCACGTTGCTACACATGGAGCCTCTGACTGGTGCCAACAACAAGATACACGCATGAACCTATGTAGGCTACACAGTCTTTATATGGGGCACACGTCAATAAATCTACATTCAAAAGTGTGTTGGATTATTGAAttaagaatgtcaaatgtcatgGTATAGAGCTGTCAAATGTCATGGTATAGAGCTGTCAAATGTCATGGTATAGAGCTGTCAAATGTCATGGTATAGAGCTGTCAAATGTCATGGTATAGAGCTGTCAAATGTCATGGTATAGAGCTGTCAAATGTCATGGTATAGAGCTGTCAAATGTCATGGTATAGAGCTGTCAAATGTCATGGTATAGAGCTGTCAAACGTCATGGTATAGAGCTGTCAAACGTCATGGTATAGAGCTGTCAAACGTCATGGTATAGAGCTGTCAAACGTCATGGTATAGAGCTGTCAAACGTCATGGTATAGAGCTGTCAAACGTCATGGTATAGAGCTGTCAAACGTCATGGTATAGAGCTGTCAAACGTCATGGTATAGAGCTGTCAAACGTCATGGTATAGAGCTGTCAAATGTCATGGTATAGAGCTGTCAAATGTCATGGTATAGAGCTGTCAAATGTCATGGTATAGAGCTGTCAAACGTCATGGTATAGAGCTGTCAAATGTCATGGTATAGAGCTGTCAAATGTCATGGTATAGAGCTGTCAAATGTCATGGTATAGAGCTGTGTGTGGCAATGTCACAAAGATCATTTCAATTGAGACAAAGACTTTTCATTGTTGAAATAAACcgattattttttttgttttttgtattcACAACTATTCGAATATTAACGTCAGTTTGGATATTTGAATAACCGAGCCCATCCCAAGGGTGGAGAGAAAGGCGAGCGGGAGAGCAACTGgggggcagagagtgagagattttctcctgctgctcctcaccTCTTCCTCAATACTCTTTCTGAGccccacaaacacacattagGCCCACTCATGATACCGTTGTCACAACACTGGTTATTCTGGGCTGGCGTTAGCATGGCTACAACACACACGCTCAGATTGGCCAAACCAGAGTACCAGGCCAGCCGGCACAACTGACGCCAAACTAAGGCCAAAAACACAAGATAAGGAATTCCCAGACTTCCCAATCCCAAATAGAGAGTTCTAGCCTTTACTCCCTAGGATCCTCTCTGGATCTGAAATGTAGGATTTTGATTTGGGATTCAGCAGAGGAAACAAGACAGAAATTGGAACATTCCACTTCCTGGGGGAAAGGTTATAAGTAGGGCAATTCACTCCTCCTTTAGCATcttcacacacacagtggaggtcTGTGATCTGAATTCTAGGAGTTCTTCACAGGTCCAAGAGACCCGAAATTCCAAGATCCGACCCAGGACTTGAGCAGGTCCGGGGTCCTAAATTCTGACTGGGGTCTGGTCCGATATAACTGCCATGTGTTTCTGGACACATCCTCTGTTAAGATAATGTGTGAGGTGATGAGAACTGCACAAGCTTGTTATCTGTGTCAGTCAATTGCAACTCAAAACATATAGTTTATGTCCAGCTGAAAGTGGTtgatttaaatgtatgctcactcagctgtgcttcacaagtaatacaaaacggatctattaccggtgtgatcatacagcctacctcaaattttgaaacagatgaattttttttttttaaaaggcccGAACAACAATGCATTGTCAGGGCAATTCCAGCAAAGCCAATATGCAGTGGTAATGTATTGGGCCTCTAACAAACCAGTACTGtttttttaattggttaatgttgtaTAGGCTTACGTTTAAGTCATGTTAAAAGAAAATATGAACGGTAGAACtcagcttgcattttgactcagaaggTGATCTTGACTCAAAAGGTTGGTTACCGCTGTTCTagacttcttatggctggggggcagaaTTGAGGAGCTAGGATGAATAAGGtgtccagagtaaactgcctgctactcaggcccagaagctaagatatgcatataattagtagatttggatagaaaacactctgtagtttctaaaactgtttgaatgctgagtataacagaactcatatggcaggcaaaaacctgagaaaaaaatccaaccaggaagtgggaaatctgaggtttgtaggttaagtctttgcctatccaattTACAGTATAAAATTTGGTCcggttgcacttcctaaggcttccactagatggcaaccgtctttagaaccttgtttcaggcttctactgtgaagggggaacgaataagagctgtttgagtcagggggctggcagaatgccatgagctaagtcATGCGCGCGGCCGTGAGAGCTAGCTGCGTttcttttcatttctaaagacaaaggaattgtccggttggactATTATTGAAGAtggattctatacatcgtttgacatgtttctacgaactgtaatggaactgtcGTCTGAACTAAGAGCCTGCAccttgtgaatttggatttgtgaactaaacgcgaaCAAAaagggaggtatttggacatatatagactttatcgaacaaaacaaacatttattgtggaactgggattcctgggagtgcattccaatgaagatcaaaggtaagttaatatttataatgctatttctgacttctgttgactctaCAACacggcgggtatctgtatggcttgttttggtctctgagcgctgttctcagattattgcatggtgtgcttttttcgtaaagcttttttgaaaatctgacacagcggttgcattaaggagaggtatatctttaattccatgtataacacttgtattttcatcaacatttatgatgattatttctgtaaattgatgtggctctctgcaaaatcaccagatgttttggaagcaaaacattactgaacataacgcgccaatgtaaactgagatttttggatataaatatgaactttatcgaacaaaacatacatgtat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1932678 True 6467 lncRNA 0.43 2 36055215 36061876

Neighbor

gene id symbol gene type direction distance location
LOC110499422 arl3 coding upstream 9138 36037722 ~ 36046077 (+)
LOC110499421 LOC106612362 coding upstream 26969 36021099 ~ 36028246 (+)
LOC118942065 NA coding upstream 79795 35971224 ~ 35975420 (+)
LOC118942471 NA coding upstream 170982 35884180 ~ 35884233 (+)
LOC110499417 LOC106589835 coding upstream 188366 35837323 ~ 35866849 (+)
LOC110499426 LOC106589844 coding downstream 63627 36125503 ~ 36157782 (+)
LOC110499428 LOC106589848 coding downstream 99327 36161203 ~ 36170899 (+)
mrpl27 LOC106589850 coding downstream 111312 36173188 ~ 36179601 (+)
LOC110499432 LOC106589856 coding downstream 145502 36207378 ~ 36247512 (+)
LOC118942466 NA coding downstream 361870 36423746 ~ 36423861 (+)
G1689783 NA non-coding upstream 2208 36052148 ~ 36053007 (+)
G1689736 LOC106589843 non-coding upstream 4946 36047198 ~ 36050269 (+)
G1689758 NA non-coding upstream 55153 35998695 ~ 36000062 (+)
G1689676 NA non-coding upstream 165388 35889601 ~ 35889827 (+)
G1689672 NA non-coding upstream 171276 35883568 ~ 35883939 (+)
G1689809 NA non-coding downstream 38666 36100542 ~ 36102150 (+)
G1689817 NA non-coding downstream 53302 36115178 ~ 36115479 (+)
G1689818 NA non-coding downstream 53713 36115589 ~ 36115868 (+)
G1689835 NA non-coding downstream 98063 36159939 ~ 36160239 (+)
G1689843 NA non-coding downstream 123304 36185180 ~ 36185495 (+)
G1689671 NA other upstream 173341 35881578 ~ 35881874 (+)
LOC118942012 LOC106589797 other upstream 353076 35701200 ~ 35702156 (+)
G1689347 NA other upstream 372778 35681367 ~ 35682437 (+)
LOC110499396 LOC106589821 other upstream 670649 35381609 ~ 35384567 (+)
G1687675 NA other upstream 1728961 34325837 ~ 34326254 (+)
G1689732 LOC106612293 other downstream 58740 36120616 ~ 36125390 (+)
G1690092 NA other downstream 202784 36264660 ~ 36264981 (+)
G1690099 NA other downstream 213606 36275482 ~ 36275943 (+)
G1690116 NA other downstream 243063 36304939 ~ 36312698 (+)
G1690753 NA other downstream 816175 36878051 ~ 36880738 (+)

Expression


Co-expression Network