G1689732 (LOC106612293)


Basic Information

Item Value
gene id G1689732
gene name LOC106612293
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 36120616 ~ 36125390 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1932658
CACAAATGTTTATTAGCATTCACCTAAAGCAGTTACAAGAAATCTTGCGAGGGTACACAAAATCCACAGATTCATTTGTTAAGCTAGTGGAATGCCCTTCATCCCTCCCCTATCGAGCCTTTTCCATCAACAATGTACAACCAGCTCACAACAGAGGGACTAAACCACAGTTGGAGGGGGGTTTGGGATAAGCTGGTGGAACTAGCTTGATCGAACAAACGTTAAACGCagcgatcaggctggttccaccaggctagggttgggagagagagaatgggaaaaaTGAGTGTATTTGTACATCAGGAATGGGAAGAGACCATATGAGAACAACACAGGGGGAAGAGATGGCGTGATCAGATCTACCACCACAGCTGTAATTGACTCTTACAAACCAGAACAAGGCAAACGGCAGCAGTAGCACCAAGACGAGCGCCGGGCGACAACTGCACCGGGCACTCACAGGGTACCGCAACACCCCCGCCAGCCACTGCACTGCCACCTCACCATCAGCACTGCATCGCACCTTAACAGCTAACCAGCAATACTCAACTGCTACACAACTGCGCCTAATGCACAAAAGATAACaagaggaggagggttagaatTCACAGGAAAGCAAACTTAGAACAGAGAAACggcaagaaagaaaaaaaaaagatctaGTAGACGTTaggcaaaaaacaaaaacataacacTGCTAGGCAGGTTAACCAATTACATAACACGTGACATTTGATACAATATTGGCTTATTATTTttgttccttctctcttccctctacaTGTTACTGCTTTTGCTTAGAAAATAATGGAAAATATTTAGGGGCTATTCACTCTCCCTTTGCTAAAAATCAACtctgcaaaaaaacaaaacacagtTAACTCAAAAAACAGAATCTGTCTGTAGAGAATAAAAGACTACTAAATACAGAGAAAAGCTGTAGCTACTTCAccataaaatgttttattaacaAGATCAAATCAAAATGCAACAAACCAGCACTAACAATAAGACAAAATCCAGTATTCACCTCACAAAACCTTTAAACGTGTCCTCTACTCTAGTCATGGGAGTTACATCGCCTTGGTAATTATATAGTAGAGTCTTTCTGGGCAACTGAAACCAAATAAATCATTTTAGACCAAGTCACAATAACCTTTTGGTCAGTATTCTGTGGGGCATAGAGGGGTGTCCACTGGCAGACTTATGATCTGGTTGGCGTCCGCAGAGAAGAAGTCTCCATCGTATCTCACCTGGAAAGAAAAGACAAGCTGTGTTGGTGGCGGTCAAATGATACGCTGCTAGTTTGAGAACAGTTTGATTGTCTAGTCGTGTCAATCTAAAGTAAAATGTACAGATCGACCATTCCATCGAATGGTCGATCGACCATTCCATTCCACTTGTCGGTTTGTTTTTAAAATGGCGATTTAACATGTCAATTGtccatgttacagaactgaccctTTCCCCTGTGGGCAGGAAATAAGTTCTTTACAGCGTCAGTCGTCTTCACACTCCAAGGGCCCCCAACCCAAAGCTACCTCTCAATATCACAATTGTTTGCTTATTTTTACTCAGGCATTTATTGGACAACAAACCTTGGGGTCCTCCCTCCTTCACCAGTGAGACCACAGACACAGTGGTACAGCCAGCAGAATTCTGTCTGTGGTCCTGTGAAAGTTCCGTACCTCACCACCACCTCACACCTCACCAACTGACAGCACGGACCACGCGTCGCCATTGACGACCTGCTCCATAGCAACCGCCATCGCACCCACCAACTCAGCAACAGGCAGGTCACATGGGCGGGTCGCGTCACACCACACTAACTGCTCTCACACTGCCATCTCTGCCACACCCCCACCTCTCTGTTTGACAAGAGGACCGCAGCTTGGAGGAGAGAATTCCACATTTAGGTAAACGAATGTTTGATTTTAGCACCCCGCCATAAATATAGCATCTCAAAAATAATAGGCCCATTTTATAAATATTGTAAACAATTTTACCCTACTTTACTTCTGACCTTCCATGTAGATAAAATCCTAATGTTGGCTGATGTGTCAGTTTGGTTGGATGTAAAAACATTGGTAGACACCCACACACTTGAATAAAAGCATTCAAGTGTACAGATATCCAGATTTATTTCCTGACTTGACTTGTGTACCCTGCAACTGCATGTTACTCGATGTGTGCACTACTTTCTGAACTGGTTCTAAAACCTAGTTTACAATGGTAGTTTCCCCGGCAACAACCCAGGGTCAGGATTCTGCAGTCTTGACTGGTACGCTGCAACGCTGGTGACTAAACAAGACTAAAGTGTCACTCAATATCAGACTGTCAAGGCTGCAGAACACTGTCCAACTGCATTTGAATTTAAACCTACTCTGTAGTCTCTCCTACACGAACTAAACTATCCTTACATATATGTGATGGTCACACCCCTTCTCCCCTTCCTTGTGTACCGTTTTAATGGCTCCGGGTTGGAGCTGTTGTTACTAAGAGTCGGTTCCGTTGTCCTCGGGGGACTTGGGCCTGCTCTTGGACCGCGACCTGGATTTGGAGCCTCTGTTGGAAGCCGGGCTGCGGGAGCGGGACCTGGAAGCACCACGGGACCTCGATCGAGATGGGGACTTGCTCTTGCGGGGGGTGCGGGACTTGGAACGGGATCTAGAGTAGGAACGAGACCGGGAGCGGCTGTAGTCACGGCCACGGGAGCGGCTCCTGCTCCGGGAACGACTGCGTCTGCGCCGACGGGGGCTGGTCCACCGCCGCCTCGGCGCCCGAAGTGAGAGTCTGGTGGACGGCCATAGCGCGCCATCTGGACTCGCAGTTCCCGCCCGTCAAGCAAGGCCCCGTCCATCGCGTCCATCGCGTCTTCAGCGTCGCGGTTATCGTGGAACCGCACGAAAGCGAACCCGCGGCTCTCCTTGGTGTACCGATCGCGGGGGATGTACACGTCTCCCACCCGGCCGTACTTCTCGAAAACTCGTCGTAGTGTCTCAGGAGAAGTTCGGTAGGTGAGATTGTCCACTTTGAGCGAGGTCATACCCTCGACATCGGGCGGGGGCCTTCCGTAGCTCATCTTTGCTCCTCAATATGAAACAGCCAGACGATTACAAATCGAAAACAGACTATTCGGGACTTGTTTTCCGATGAAAATCGTTATTTTTGGTAAAATTCGATGTTGTTTTGCCGATTTCCAGGCCTACCTCACACACGTTCTCTCAACTCCTTGCACGTGAAATGGCGGCGCCA

Function

NR:

description
PREDICTED: serine/arginine-rich splicing factor 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1932658 True 3255 TUCP 0.48 2 36120616 36125390

Neighbor

gene id symbol gene type direction distance location
LOC110499422 arl3 coding upstream 74539 36037722 ~ 36046077 (+)
LOC110499421 LOC106612362 coding upstream 92370 36021099 ~ 36028246 (+)
LOC118942065 NA coding upstream 145196 35971224 ~ 35975420 (+)
LOC118942471 NA coding upstream 236383 35884180 ~ 35884233 (+)
LOC110499417 LOC106589835 coding upstream 253767 35837323 ~ 35866849 (+)
LOC110499426 LOC106589844 coding downstream 113 36125503 ~ 36157782 (+)
LOC110499428 LOC106589848 coding downstream 35813 36161203 ~ 36170899 (+)
mrpl27 LOC106589850 coding downstream 47798 36173188 ~ 36179601 (+)
LOC110499432 LOC106589856 coding downstream 81988 36207378 ~ 36247512 (+)
LOC118942466 NA coding downstream 298356 36423746 ~ 36423861 (+)
G1689818 NA non-coding upstream 4748 36115589 ~ 36115868 (+)
G1689817 NA non-coding upstream 5137 36115178 ~ 36115479 (+)
G1689809 NA non-coding upstream 18466 36100542 ~ 36102150 (+)
G1689779 NA non-coding upstream 29629 36039961 ~ 36090987 (+)
G1689771 NA non-coding upstream 35115 36024248 ~ 36085501 (+)
G1689835 NA non-coding downstream 34549 36159939 ~ 36160239 (+)
G1689843 NA non-coding downstream 59790 36185180 ~ 36185495 (+)
G1689845 NA non-coding downstream 62901 36188291 ~ 36188507 (+)
G1689849 NA non-coding downstream 70717 36196107 ~ 36196451 (+)
G1690078 NA non-coding downstream 122418 36247808 ~ 36248254 (+)
G1689671 NA other upstream 238742 35881578 ~ 35881874 (+)
LOC118942012 LOC106589797 other upstream 418477 35701200 ~ 35702156 (+)
G1689347 NA other upstream 438179 35681367 ~ 35682437 (+)
LOC110499396 LOC106589821 other upstream 736050 35381609 ~ 35384567 (+)
G1687675 NA other upstream 1794362 34325837 ~ 34326254 (+)
G1690092 NA other downstream 139270 36264660 ~ 36264981 (+)
G1690099 NA other downstream 150092 36275482 ~ 36275943 (+)
G1690116 NA other downstream 179549 36304939 ~ 36312698 (+)
G1690753 NA other downstream 752661 36878051 ~ 36880738 (+)
G1691142 NA other downstream 1416530 37541920 ~ 37543265 (+)

Expression


Co-expression Network