G1690423


Basic Information

Item Value
gene id G1690423
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 36559044 ~ 36564783 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1933481
GGGAGGAATACTTGGAAAAACACAAGATTTTTAACATATCAGCTTATAAGTATTCTGTCTAGTGAACCCTACACCAAGAGGAAAGTAGGAATAATCACACAAAAGGGGGAAATTAAGAAGAGACATAACACACGCGCTTGTTGTTGGGATTTGACTTTCTTCTAAAAACCAAAACTACATACAATACAAATAAGAATTTAAAAAGGGATGCCAATATCAATCTTCCTCTTAGACTACAGAGCTTCAGCTTCTGCAAAGCAAAGAAACAACGCAACAAGACATACACAACTTTTCAAGACGAAAACAGCAAAGCGTTTTGAGTTTGTCTGTGGTGGGCGTGAGGGGTTAAAGAGTGAGACTGACTACACTTTCATATGGTCTGTAAAACAGCCTGCCACTTTCATATGGTCTGTAAAACAGCCTGTCACTTTCATTTGTAAGGTTGTCTTGAGTAATGCCCATGCAAAGTATCTGAGAAACAGCATCGGTAGAGATGAACAAGTTCTGAATATACATAGTTCATTTTTTTATATACACAGGAGATTTATGTACGGAAAAAAATactgtacaaaaacaagatcTTTGTAAAAACAACAAAACCTTTCATATAATAACATATCCTTTCTATACTGTCATCTTTTGGTCTGTAGTAAAGAGATATATAAAGTGATGTGGGTATATTCCACAGTCCTGTATAGGCAACACCATTCATTTGCCCAACGTACACTGTGTTCAtttgttatatacagtagtacatCTGTTACATTCATCTCTCATTGGGTCATGGGGAGAGCATCTGTACGGTGTTAATATCAGGACAGCCTCATTCTCAGCAGGAATTCTTTCAATCTGGGCAGGACTGAGAGGCAGTCCCAATAGGGACAACCGTACCTCTGTAGACAAGAGCATGACACAGAGAAGTCAAGCCTGAGAAAAGAAAAAGAACACAATAAAAACTGTTGCCTCACGACACAGATGCTGATAATGTTCACATTTGAATGCTTGAACAACAAATAGAATCATGCCTGATTTTATGTAAAGACATAAATATCACAATATCAACTAATAAAAGCAATTGCAAATTGGGCACGTGCTAAAATAACGAGGGCAGTTTCATGCGTGTGTGACAGTAGGCCTGGTAGAGAGGAGACCGAGAGCTTTATTCTGCCTTATGGCTTTAGCTTCCCGAACTTGTTCTGTTCCAACAGAGTGATCTGGTGCCAAAGAATTAGGAACAAACCTTTGTTATACATAACACTGCTATGAGAAGAACATGAGAACGATGACGCTGACATCGTAATAGCCTGGCGGCCGGGTCTGTCTCTGCTTTATCCTACATGTTGCCGCCTCACTAAGGCAATAACGTAGAGGTTTTAAAGTATGAGCAGGGCAGTGATCGTTTACACGTTACAAACAGCATTTATCTGATGGAGAAGAAGACGAGGAGGGAGGTGGATAAAGTGGGACAGGTAACGTCAGGGGGAGACGTCTCAACTGACATTTACACTATGGAAaccagagaaaagagggagagggaagagggtaGGTAACATAAGATTCAACATACACATTCATAAGAAAATACAACACCTCAGTAAAAGCCatgaaaaatacagaaaataacaCAACAGCCATGTGTGGACAGATACACTACATCAGAAAGAAAAGAACCAaatgaaaaacacacacagatcGGAAATAAAATAAACCCATTCCGTTTCTTACTCATAGACAGTACAGAAAGCTACCCGCTTTCCCTCACAAGGGCCAATCACAGAGAGACATGGATGAGGATGAAATATATGGTATAGAAAATGAGTAGAAATGTGCTACTGAGCCTAAATAATTTTGTCCTTCAATCTCTTGATACGAGTTGTGAGATGGTAGGAGGCAGTTCCTAGGTTGTGTGTGGGGTCAGTTTTCGAGCAGGGAGGACATTGATCGGGTGGTAGCCTCAGGCAGGTGTAAGCTCAGCCTCTCAACCTCATGCTTCTGGGGGTGTTCAGGGATGAATGAGGGCTGGGCAACAGggccgggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgcgtgcgtgtgtgtattctCCATCTTTGTGAGTGTATTCTGTCTCAGTCCCATTACAGAGGCCCCTGTGTGGCCTGGTACTCGGCCACAATGTTCTTTGTGCGCCCAAGCTCTCTTCTCAGATCGGCCACCTCCATTTTCAGGGCGGAGTTCTCCTTCTCCAGGAAACCCGCTCGGATGGCGATCTGGTTTTCTTTGAGTCGACGGGCGTCACGTGACCTCTTGGCAGCCACGTTGTTCTTCTTACGCCTCACCCAGCTCCTCGGGGGCGAACTTGCGTTTGCGGGGGTCGAACATCTCCTGTCCCGGTACGCTGGACAAAACCAAGTCAGCAGGGTCAGGCACATAGCTCACCGGCACCTGGATGGACTCTGGGTCGATGGGGCTGGGAGTATTTCTGGACGGC
>TU1933483
GGGAGGAATACTTGGAAAAACACAAGATTTTTAACATATCAGCTTATAAGTATTCTGTCTAGTGAACCCTACACCAAGAGGAAAGTAGGAATAATCACACAAAAGGGGGAAATTAAGAAGAGACATAACACACGCGCTTGTTGTTGGGATTTGACTTTCTTCTAAAAACCAAAACTACATACAATACAAATAAGAATTTAAAAAGGGATGCCAATATCAATCTTCCTCTTAGACTACAGAGCTTCAGCTTCTGCAAAGCAAAGAAACAACGCAACAAGACATACACAACTTTTCAAGACGAAAACAGCAAAGCGTTTTGAGTTTGTCTGTGGTGGGCGTGAGGGGTTAAAGAGTGAGACTGACTACACTTTCATATGGTCTGTAAAACAGCCTGCCACTTTCATATGGTCTGTAAAACAGCCTGTCACTTTCATTTGTAAGGTTGTCTTGAGTAATGCCCATGCAAAGTATCTGAGAAACAGCATCGGTAGAGATGAACAAGTTCTGAATATACATAGTTCATTTTTTTATATACACAGGAGATTTATGTACGGAAAAAAATactgtacaaaaacaagatcTTTGTAAAAACAACAAAACCTTTCATATAATAACATATCCTTTCTATACTGTCATCTTTTGGTCTGTAGTAAAGAGATATATAAAGTGATGTGGGTATATTCCACAGTCCTGTATAGGCAACACCATTCATTTGCCCAACGTACACTGTGTTCAtttgttatatacagtagtacatCTGTTACATTCATCTCTCATTGGGTCATGGGGAGAGCATCTGTACGGTGTTAATATCAGGACAGCCTCATTCTCAGCAGGAATTCTTTCAATCTGGGCAGGACTGAGAGGCAGTCCCAATAGGGACAACCGTACCTCTGTAGACAAGAGCATGACACAGAGAAGTCAAGCCTGAGAAAAGAAAAAGAACACAATAAAAACTGTTGCCTCACGACACAGATGCTGATAATGTTCACATTTGAATGCTTGAACAACAAATAGAATCATGCCTGATTTTATGTAAAGACATAAATATCACAATATCAACTAATAAAAGCAATTGCAAATTGGGCACGTGCTAAAATAACGAGGGCAGTTTCATGCGTGTGTGACAGTAGGCCTGGTAGAGAGGAGACCGAGAGCTTTATTCTGCCTTATGGCTTTAGCTTCCCGAACTTGTTCTGTTCCAACAGAGTGATCTGGTGCCAAAGAATTAGGAACAAACCTTTGTTATACATAACACTGCTATGAGAAGAACATGAGAACGATGACGCTGACATCGTAATAGCCTGGCGGCCGGGTCTGTCTCTGCTTTATCCTACATGTTGCCGCCTCACTAAGGCAATAACGTAGAGGTTTTAAAGTATGAGCAGGGCAGTGATCGTTTACACGTTACAAACAGCATTTATCTGATGGAGAAGAAGACGAGGAGGGAGGTGGATAAAGTGGGACAGGTAACGTCAGGGGGAGACGTCTCAACTGACATTTACACTATGGAAaccagagaaaagagggagagggaagagggtaGGTAACATAAGATTCAACATACACATTCATAAGAAAATACAACACCTCAGTAAAAGCCatgaaaaatacagaaaataacaCAACAGCCATGTGTGGACAGATACACTACATCAGAAAGAAAAGAACCAaatgaaaaacacacacagatcGGAAATAAAATAAACCCATTCCGTTTCTTACTCATAGACAGTACAGAAAGCTACCCGCTTTCCCTCACAAGGGCCAATCACAGAGAGACATGGATGAGGATGAAATATATGGTATAGAAAATGAGTAGAAATGTGCTACTGAGCCTAAATAATTTTGTCCTTCAATCTCTTGATACGAGTTGTGAGATGGTAGGAGGCAGTTCCTAGGTTGTGTGTGGGGTCAGTTTTCGAGCAGGGAGGACATTGATCGGGTGGTAGCCTCAGGCAGGTGTAAGCTCAGCCTCTCAACCTCATGCTTCTGGGGGTGTTCAGGGATGAATGAGGGCTGGGCAACAGggccgggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtATCTCTCCCAATTAGAAAATTACCCCTCCTCTCAGTCTGGCAGCTAGAGGAGTTTTCCCATAACCTTTGTATCACAATCAGCTTTCAGTCAATTCATTACTGGACTAAAGACATGCATGGATATACCTTCATgtgaatacatttaaaaaaaaaggcaaatctcct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1933481 False 2575 lncRNA 0.44 3 36559044 36564783
TU1933483 True 2243 lncRNA 0.41 3 36561712 36564783

Neighbor

gene id symbol gene type direction distance location
LOC110499433 LOC106589859 coding downstream 171372 36344254 ~ 36387672 (-)
LOC110499540 LOC106589857 coding downstream 222592 36258019 ~ 36336452 (-)
LOC110499429 LOC106589855 coding downstream 362594 36181083 ~ 36196450 (-)
LOC110499427 LOC106612293 coding downstream 433607 36120507 ~ 36125437 (-)
LOC118942067 NA coding downstream 441627 36115578 ~ 36117417 (-)
LOC110499436 LOC106589862 coding upstream 18751 36583534 ~ 36592764 (-)
LOC110499438 LOC106589865 coding upstream 327063 36891846 ~ 36896982 (-)
LOC110499441 LOC106589863 coding upstream 355395 36920178 ~ 36935086 (-)
LOC118942469 NA coding upstream 381483 36946266 ~ 36946381 (-)
LOC110499443 rbfox3 coding upstream 491170 37055953 ~ 37197149 (-)
G1690422 NA non-coding downstream 8808 36538269 ~ 36550236 (-)
G1690367 NA non-coding downstream 139036 36418789 ~ 36420600 (-)
G1690359 NA non-coding downstream 154985 36403777 ~ 36404059 (-)
G1690336 NA non-coding downstream 209251 36348424 ~ 36349793 (-)
G1690307 NA non-coding downstream 241894 36303795 ~ 36317150 (-)
G1690457 NA non-coding upstream 1558 36566341 ~ 36569184 (-)
G1690494 LOC107712493 non-coding upstream 50814 36615597 ~ 36615810 (-)
G1690503 NA non-coding upstream 55104 36619887 ~ 36620277 (-)
G1690504 NA non-coding upstream 56181 36620964 ~ 36621210 (-)
G1690505 NA non-coding upstream 57307 36622090 ~ 36622404 (-)
LOC110499416 dnah17 other downstream 692260 35864651 ~ 35951415 (-)
G1689556 NA other downstream 915267 35643368 ~ 35643777 (-)
G1689461 NA other downstream 1078987 35478114 ~ 35480057 (-)
G1690649 NA other upstream 137763 36702546 ~ 36703441 (-)
G1690696 NA other upstream 244916 36809699 ~ 36810143 (-)
G1691432 NA other upstream 674044 37238827 ~ 37239310 (-)
G1692288 cnrg other upstream 1918112 38478761 ~ 38485362 (-)

Expression


Co-expression Network