G1690772


Basic Information

Item Value
gene id G1690772
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 36906936 ~ 36916416 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1933872
ACAGTATGCACATGGGAACGCATGCGGACGCCTTCAGGCTACTAGAACAGGGCTCGGTGAGAATGTGACGCCCTTACTGGGGTCGCGTTAAGTGTGGAGGTGGAGTTACTGAGGTTGAAGATTCCTGGTGTCTGTGATGCCCGCTGTTTGGTGCGACGCAGACCCGGTGGTAAATAGTGATACTCTCTAAACTGCTCTGGCGACAAAACAAACCGTGTTGCCCTGTCTCCAATCATCCACATGgctgggagaacctattcaaAGAGCTGTGAAAGCctgtctgcagatgaagaggtcccaatgaagagcagtggttctctgtcctggtcctggggtttcaaaggggtgcacatttttgtctttgcctcatcatcaagcttcaacTGATATTTGTGTATTCATTTGTGATGCTATCCTTAAAATGATCCTGCTGTTGTCACATGCTATACATGCACGTGTTTGCACATGCATCTATCTGTCCAATGTTATCATGATTTGTTATAAGAGATATTATACGTTAGTAATCCACAATAACCTGGGGATGTAAAAGTCTAATTACATTATCTTCCATATTCCTACAGATACTGTACCTTGCAACTGGAGATTCTTTCAAAACGATTGCCTACAGTTACCGTGTTGGGTGAATTGTCGTGAGCGTGACCAGGGCCATCTGGGATTTCCTCGTGGGGGAATTCAGGCACGTGTGAAGGCTACCTGTGTCCTGCATAACTTCATGAGGACGGACACAAGGACCAGGAGGGGCCCTGCAGCCCCCCCGCCGTGTGCCAGAGGAGAGGTCTGCTGCTCTGCAGGATGTTGCACGGATGGGGGCCAACAACGCAGCAGGGGAGGAAATCCAGACACTAGgtatgttttgatgtgagagaggatgccaaccCCCAGTCCCGTCATCGCCCACCTCACCCACTCGAAGATAaccggggtggcaggtagcctagtggttagagcattgggccataactgaaaggttgcttgatcgaatcctgagctgacaaggtaaaaatcggttgttctggccctgaacaaggcagttaacccactgttcctaggccgtcattgtaaataagaatttgaactgacttgcctagttaaataacatttaaaaatatatatataaaaaaaatgttgggcCAACTGGGGACCCAAGGTTGATTAGGAGATTGTGATGACCTGAGAGAATATGAAGTTtagtagcactgtaattcatatGCTGTCTTCACTGCTCCTCTGTTCtgacctctttccctttctgtctttgaCATTATctcacggcaggtagcctagtggttagtgttggaccagttaccagcaggtagcctagtggttagagtgttgagccagtaaccagcaggtagcctagtggttagagtgttgggccagtgactgaaagatcgaatccctgagatgacaaggtaaaaatctatcgttctgccccctgagaacaaggcagttaacccactgttcataggccatcattgaaaataagaatttgttcttaactgacttgccaggttaaataaaggtgaaataaataaacaccTCTCCCCACCTCATCTTTCTTCCTCCCTATTTTTATAATGCAGACCA
>TU1933871
CGGGAACTCGGGCctttttctagagctccgacttgaAGATCACAAACATTATGTTTcaactttttttctctctctctcgagttCCCAGTCTTGAATAAATCATAAATCCAGAGCAtgtcagactttgatgacaaaagtTTGCCCACAGGAAGACCGCCGCGCCACGTTCAAATGAGCACATTACAACAACAGTAAATAGTGATACTCTCTAAACTGCTCTGGCGACAAAACAAACCGTGTTGCCCTGTCTCCAATCATCCACATGgctgggagaacctattcaaAGAGCTGTGAAAGCctgtctgcagatgaagaggtcccaatgaagagcagtggttctctgtcctggtcctggggtttcaaagggATACTGTACCTTGCAACTGGAGATTCTTTCAAAACGATTGCCTACAGTTACCGTGTTGGGTGAATTGTCGTGAGCGTGACCAGGGCCATCTGGGATTTCCTCGTGGGGGAATTCAGGCACGTGTGAAGGCTACCTGTGTCCTGCATAACTTCATGAGGACGGACACAAGGACCAGGAGGGGCCCTGCAGCCCCCCCGCCGTGTGCCAGAGGAGAGGTCTGCTGCTCTGCAGGATGTTGCACGGATGGGGGCCAACAACGCAGCAGGGGAGGAAATCCAGACACTAGgtatgttttgatgtgagagaggatgccaaccCCCAGTCCCGTCATCGCCCACCTCACCCACTCGAAGATAaccggggtggcaggtagcctagtggttagagcattgggccataactgaaaggttgcttgatcgaatcctgagctgacaaggtaaaaatcggttgttctggccctgaacaaggcagttaacccactgttcctaggccgtcattgtaaataagaatttgaactgacttgcctagttaaataacatttaaaaatatatatataaaaaaaatgttgggcCAACTGGGGACCCAAGGTTGATTAGGAGATTGTGATGACCTGAGAGAATATGAAGTTtagtagcactgtaattcatatGCTGTCTTCACTGCTCCTCTGTTCtgacctctttccctttctgtctttgaCATTATctcacggcaggtagcctagtggttagtgttggaccagttaccagcaggtagcctagtggttagagtgttgagccagtaaccagcaggtagcctagtggttagagtgttgggccagtgactgaaagatcgaatccctgagatgacaaggtaaaaatctatcgttctgccccctgagaacaaggcagttaacccactgttcataggccatcattgaaaataagaatttgttcttaactgacttgccaggttaaataaaggtgaaataaataaacaccTCTCCCCACCTCATCTTTCTTCCTCCCTATTTTTATAATGCAGACCA

Function

NR:

description
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1933872 False 1608 lncRNA 0.47 5 36906936 36916416
TU1933871 True 1394 lncRNA 0.47 6 36908409 36916416

Neighbor

gene id symbol gene type direction distance location
LOC118942468 NA coding upstream 2991 36903830 ~ 36903945 (+)
LOC110499437 nogg3 coding upstream 57865 36847303 ~ 36849071 (+)
LOC110499541 ankfn1 coding upstream 97477 36695775 ~ 36809459 (+)
LOC118942015 LOC106589862 coding upstream 322846 36578726 ~ 36592198 (+)
LOC110499435 LOC106589861 coding upstream 342106 36468873 ~ 36564830 (+)
LOC118942467 NA coding downstream 2120 36918536 ~ 36918651 (+)
LOC110499442 LOC106589867 coding downstream 48761 36965177 ~ 36985560 (+)
LOC110499446 LOC106589902 coding downstream 1159557 38075973 ~ 38081270 (+)
LOC110499447 LOC106589900 coding downstream 1167479 38083895 ~ 38203970 (+)
LOC110499600 NA coding downstream 1664319 38580735 ~ 38594305 (+)
G1690757 NA non-coding upstream 21938 36883996 ~ 36884998 (+)
G1690747 NA non-coding upstream 46510 36858779 ~ 36860426 (+)
G1690531 NA non-coding upstream 93353 36811965 ~ 36813583 (+)
G1690615 NA non-coding upstream 110567 36795942 ~ 36796369 (+)
G1690801 NA non-coding downstream 39432 36955848 ~ 36957193 (+)
G1690810 NA non-coding downstream 57277 36973693 ~ 36973911 (+)
G1690804 NA non-coding downstream 69851 36986267 ~ 36986774 (+)
G1690805 NA non-coding downstream 70659 36987075 ~ 36987231 (+)
G1690931 NA non-coding downstream 125820 37042236 ~ 37042577 (+)
G1690753 NA other upstream 26198 36878051 ~ 36880738 (+)
G1690116 NA other upstream 594238 36304939 ~ 36312698 (+)
G1690099 NA other upstream 630993 36275482 ~ 36275943 (+)
G1690092 NA other upstream 641955 36264660 ~ 36264981 (+)
G1689732 LOC106612293 other upstream 781546 36120616 ~ 36125390 (+)
G1691142 NA other downstream 625504 37541920 ~ 37543265 (+)
G1691189 NA other downstream 734210 37650626 ~ 37654064 (+)
G1691267 NA other downstream 888127 37804543 ~ 37809061 (+)
G1691990 aatk other downstream 1306089 38222505 ~ 38222735 (+)
G1691992 NA other downstream 1311599 38228015 ~ 38228551 (+)

Expression


Co-expression Network