G1693022


Basic Information

Item Value
gene id G1693022
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 39118316 ~ 39118826 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1936412
GTTGCCCCTTTTTGAAAAAGACAGAAGTACaaaaatatgtttacatttcAGTAGTTAAAATACTTATATTCCTATATGTACAATTATACAACATGATATAGTGTCTATAACAGACCCTAAGGAGGTTATTTATGTGGGTACATAGACCCTGAGGAGGTCATTTCTGTGGGTACATAGACCCCGAGGAGGTCATTTCTGTGGGTACATAGACCCCGAGGAGGTCATTTCTGTGGGTACATAGACCCCGAGGAGGTCATTTCTGTGGGTACATAGACCCTGAGGCGACGGAGGATAAGCCTGTTTTTTCTTCTATCCACTTGTTGTAGTTGGTCACTGCTGTGTACACGCCTGGTCGTAAGGCTCTAGAACACCCCTCGCCCCAACTGACGATTCCAAAAAGGAACATTCGATTATCCACCTCGCACACCATGGGTCCTCCGGAATCAC
>TU1936413
GTTGCCCCTTTTTGAAAAAGACAGAAGTACaaaaatatgtttacatttcAGTAGTTAAAATACTTATATTCCTATATGTACAATTATACAACATGATATAGTGTCTATAACAGACCCTAAGGAGGTTATTTATGTGGGTACATAGACCCTGAGGAGGTCATTTCTGTGGGTACATAGACCCCGAGGAGGTCATTTCTGTGGGTACATAGACCCCGAGGAGGTCATTTCTGTGGGTACATAGACCCTGAGGCGACGGAGGATAAGCCTGTTTTTTCTTCTATCCACTTGTTGTAGTTGGTCACTGCTGTGTACACGCCTGGTCGTAAGGCTCTAGAACACCCCTCGCCCCAACTGACGATTCCAAAAAGGAACATTCGATTATCCACCTCGCACACCATGGGTCCTCCGGAATCAC
>TU1936414
GTTGCCCCTTTTTGAAAAAGACAGAAGTACaaaaatatgtttacatttcAGTAGTTAAAATACTTATATTCCTATATGTACAATTATACAACATGATATAGTGTCTATAACAGACCCTAAGGAGGTTATTTATGTGGGTACATAGACCCTGAGGAGGTCATTTCAGTGGGTACATAGACCCCGAGGAGGTCATTTCTGTGGGTACATAGACCCTGAGGCGACGGAGGATAAGCCTGTTTTTTCTTCTATCCACTTGTTGTAGTTGGTCACTGCTGTGTACACGCCTGGTCGTAAGGCTCTAGAACACCCCTCGCCCCAACTGACGATTCCAAAAAGGAACATTCGATTATCCACCTCGCACACCATGGGTCCTCCGGAATCAC
>TU1936415
GTTGCCCCTTTTTGAAAAAGACAGAAGTACaaaaatatgtttacatttcAGTAGTTAAAATACTTATATTCCTATATGTACAATTATACAACATGATATAGTGTCTATAACAGACCCTAAGGAGGTTATTTATGTGGGTACATAGACCCTGAGGAGGTCATTTCAGTGGGTACATAGACCCCGAGGAGGTCATTTCTGTGGGTACATAGACCCTGAGGCGACGGAGGATAAGCCTGTTTTTTCTTCTATCCACTTGTTGTAGTTGGTCACTGCTGTGTACACGCCTGGTCGTAAGGCTCTAGAACACCCCTCGCCCCAACTGACGATTCCAAAAAGGAACATTCGATTATCCACCTCGCACACCATGGGTCCTCCGGAATCAC
>TU1936416
GTTGCCCCTTTTTGAAAAAGACAGAAGTACaaaaatatgtttacatttcAGTAGTTAAAATACTTATATTCCTATATGTACAATTATACAACATGATATAGTGTCTATAACAGACCCTAAGGAGGTTATTTATGTGGGTACATAGACCCTGAGGAGGTCATTTCTGTGGGTACATAGACCCCGAGGAGGTCATTTCTGTGGGTACATAGACCCCGAGGAGGTCATTTCTGTGGGTACATAGACCCTGAGGCGACGGAGGATAAGCCTGTTTTTTCTTCTATCCACTTGTTGTAGTTGGTCACTGCTGTGTACACGCCTGGTCGTAAGGCTCTAGAACACCCCTCGCCCCAACTGACGATTCCAAAAAGGAACATTCGATTATCCACCTCGCACACCATGGGTCCTCCGGAATCAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1936412 False 447 lncRNA 0.45 2 39118316 39118826
TU1936413 False 415 lncRNA 0.44 2 39118316 39118826
TU1936414 False 383 lncRNA 0.43 2 39118316 39118826
TU1936415 False 383 lncRNA 0.43 3 39118316 39118826
TU1936416 True 415 lncRNA 0.44 3 39118316 39118826

Neighbor

gene id symbol gene type direction distance location
LOC110499545 hid1 coding downstream 17146 39070043 ~ 39101170 (-)
LOC110499462 LOC106589873 coding downstream 63234 39032016 ~ 39055082 (-)
LOC110499458 LOC106589887 coding downstream 92289 39006786 ~ 39026027 (-)
LOC110499457 LOC106589889 coding downstream 111718 38982955 ~ 39006598 (-)
tvp23b LOC106589890 coding downstream 146265 38965588 ~ 38972051 (-)
LOC118942070 NA coding upstream 450535 39569361 ~ 39570042 (-)
LOC110499601 NA coding upstream 512000 39630826 ~ 39658354 (-)
LOC110499466 LOC106589878 coding upstream 546367 39664970 ~ 39668357 (-)
comtd1 cmtd1 coding upstream 569251 39688077 ~ 39696553 (-)
LOC110499470 LOC106589875 coding upstream 678177 39797003 ~ 39800146 (-)
G1693021 NA non-coding downstream 536 39117283 ~ 39117780 (-)
G1693013 NA non-coding downstream 7069 39108044 ~ 39111247 (-)
G1692977 NA non-coding downstream 49216 39068184 ~ 39069100 (-)
G1692969 NA non-coding downstream 104329 39013448 ~ 39013987 (-)
G1692967 NA non-coding downstream 106668 39010978 ~ 39011648 (-)
G1693039 NA non-coding upstream 21908 39140734 ~ 39150016 (-)
G1693004 NA non-coding upstream 75368 39194194 ~ 39194811 (-)
G1693075 NA non-coding upstream 131328 39250154 ~ 39250402 (-)
G1693079 NA non-coding upstream 135381 39254207 ~ 39254728 (-)
G1693088 NA non-coding upstream 139513 39258339 ~ 39258789 (-)
G1692405 NA other downstream 550127 38567380 ~ 38568189 (-)
oxld1 LOC106589895 other downstream 626276 38489508 ~ 38492111 (-)
G1692288 cnrg other downstream 632954 38478761 ~ 38485362 (-)
G1693092 NA other upstream 145475 39264301 ~ 39264691 (-)
G1693393 NA other upstream 344604 39463430 ~ 39490078 (-)
G1693485 LOC106589879 other upstream 494531 39613357 ~ 39614826 (-)
LOC100301650 LOC106611671 other upstream 992529 40111355 ~ 40313496 (-)

Expression


Co-expression Network