G1694714


Basic Information

Item Value
gene id G1694714
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 41012504 ~ 41013984 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1938388
ACTACTGTGTGTAGagtggattaactatctaattcACTACAGCTTTACTTTCACTACAGCTATACCATTCACTACAACTATACCATTCACTACAGCTATACCATTCACTACAACTATACCATTCACTACAACTATACCATTCACTACAGCTATACCATTCACAACATCTATACCATTCACTACACCTATAGCATTCCTTACAGCTATACCATTCACTACAGCTATACCATTCACAACAGCTATACCATTTACTACAGCTTTACCATTCACAACATCTATACCATTCACTACAGCTTTACCATCCACAACAATTATTTGATTCACAACATCTATACCATTCACTACAGCTATAGCATTCATTACAGCTATACCATTCACTACACCTACACCATTCACTACAGCTATACCATTCACTACAACTATACCATTCACAACAATTATTTGATTCACAACAGCTATACATTTCACTGCACCAAAACCATTCAATACAGCTTTACCATTCACTACAGCTACACCATTCACTGCAACTATACCATTAGATACTCTGACTGATTCCCAAATGGgggccatagggccctggtcaaaagtagtgcactatatagggggccCTGgtataaaagtagtgcactatatagtgggatctggtcaaaagtagtgcactatatcgtgggatctggtcaaaagtagtgc
>TU1938386
ACAACTATACCATTCACTACAGCTATACCATTCACTACAACTATACCATTCACTACAGCTTTACCATTCACAACAATTATTTGATTCACAACAGCTATACATTTCACTGCACCAAAACCATTCAATACAGCTTTACCATTCACTACAGCTACACCATTCACTGCAACTATACCATTAGATACTCTGACTGATTCCCAAATGGgggccatagggccctggtcaaaagtagtgcactatatagggggccCTGgtataaaagtagtgcactatatagtgggatctggtcaaaagtagtgcactatatcgtgggatctggtcaaaagtagtgc
>TU1938387
CACTACAGCTATACCATTCACTACAACTACACCATTCACTACAACTATACCATTCACTACAACTATACCATTCACAACAGCTATATCATTCACACCAGCTATACCATTCACTACAGCTTTAGCATTCATTACAGCTATACCATTCACTACAACTACACCATTCACTACAACTATACCATTCACTACAGCTATACCATTCACAACATCTATACCATTCACTACACCTATAGCATTCCTTACAGCTATACCATTCACTACAGCTATACCATTCACAACAGCTATACCATTTACTACAGCTTTACCATTCACAACATCTATACCATTCACTACAGCTTTACCATCCACAACAATTATTTGATTCACAACATCTATACCATTCACTACAGCTATAGCATTCATTACAGCTATACCATTCACTACACCTACACCATTCACTACAGCTATACCATTCACTACAACTATACCATTCACAACAATTATTTGATTCACAACAGCTATACATTTCACTGCACCAAAACCATTCAATACAGCTTTACCATTCACTACAGCTACACCATTCACTGCAACTATACCATTAGATACTCTGACTGATTCCCAAATGGgggccatagggccctggtcaaaagtagtgcactatatagggggccCTGgtataaaagtagtgcactatatagtgggatctggtcaaaagtagtgcactatatcgtgggatctggtcaaaagtagtgc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1938388 False 690 lncRNA 0.38 3 41012504 41013984
TU1938386 False 329 lncRNA 0.41 2 41012802 41013984
TU1938387 True 729 lncRNA 0.39 3 41013030 41013984

Neighbor

gene id symbol gene type direction distance location
LOC110499549 LOC106589914 coding upstream 424922 40525993 ~ 40587582 (+)
LOC118942071 NA coding upstream 510105 40498957 ~ 40502399 (+)
LOC110499485 NA coding upstream 521719 40487956 ~ 40490785 (+)
ephx5 LOC105009996 coding upstream 545368 40454794 ~ 40467136 (+)
mgme1 mgme1 coding upstream 568520 40439921 ~ 40443984 (+)
LOC118942019 NA coding downstream 674151 41688135 ~ 41696129 (+)
LOC110499555 LOC106589919 coding downstream 816030 41830014 ~ 41862392 (+)
parga LOC106589925 coding downstream 1159996 42173980 ~ 42282788 (+)
LOC110499494 LOC106589929 coding downstream 1394278 42408262 ~ 42413033 (+)
LOC110499602 LOC106589930 coding downstream 1402111 42416095 ~ 42419081 (+)
G1694681 NA non-coding upstream 48381 40963901 ~ 40964123 (+)
G1694663 NA non-coding upstream 70471 40941575 ~ 40942033 (+)
G1694662 NA non-coding upstream 71119 40941174 ~ 40941385 (+)
G1694660 NA non-coding upstream 74445 40937820 ~ 40938059 (+)
G1694648 NA non-coding upstream 88205 40924076 ~ 40924299 (+)
G1694755 NA non-coding downstream 37884 41051868 ~ 41053242 (+)
G1694762 NA non-coding downstream 43900 41057884 ~ 41058147 (+)
G1694864 NA non-coding downstream 230025 41244009 ~ 41244895 (+)
G1694867 NA non-coding downstream 236049 41250033 ~ 41250463 (+)
G1694895 NA non-coding downstream 287689 41301673 ~ 41304433 (+)
G1693914 NA other upstream 799551 40211522 ~ 40212953 (+)
G1693700 NA other upstream 1129879 39881958 ~ 39882625 (+)
G1693699 NA other upstream 1130661 39881349 ~ 39881843 (+)
G1693184 NA other upstream 1652869 39356345 ~ 39359635 (+)
G1692702 NA other upstream 2172233 38839934 ~ 38840271 (+)
G1695272 NA other downstream 604043 41618027 ~ 41618505 (+)
LOC110499605 LOC106590859 other downstream 1495647 42484544 ~ 42511247 (+)
LOC118942073 NA other downstream 1508526 42522510 ~ 42527008 (+)
G1696324 NA other downstream 1766015 42779999 ~ 42780549 (+)
G1696541 NA other downstream 2119643 43133627 ~ 43134013 (+)

Expression


Co-expression Network