G1695815


Basic Information

Item Value
gene id G1695815
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 42438740 ~ 42440591 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1939655
GGCATGTGTTACAcagcatacatacagtacatacacagaaTATATTTGATCATTATGTATCCAAAACATTTTCATAAAGtgtgtacatacatactgtacacagcgTGGAAGTGAATGCTTAGAAACAGTGATTATATTGACTCACGTGTAAATAAATGATTAGCTAATCTGCCTAATCTAGGGTGACTGATTTCCACAGTTTATTGTCTGAAGCAACAAAAAGATCCCTTCAGTTAAATGAGCAATCCAACACCAATCCACCACCAATCCAATACCAATCCAACACCAATCCAATACCAATCCAATACCAATCCAATACCAATCCAGTAACCAATCCAATACCAACCCACCACCCATCCAACATCAATCCAACACCAATCCAACATCAATCCAACACCAATCCATCAGTAATCCACCCAATTAAAAGATGACCCTTTAGAAATGCAAAAGCATTTCAGAAGAAAAAGCAAGTGATTTGAAACAAGAGCTTCAGAATCTTCTAAGTCTCTACTTCAAAATACGACCAACGCCATTAGAATGTCACTACACTAATACTTCTCCTACGtgtaaaatgtggattgaccagattgttaactttcttcctcttgaaaagctcacgcATGACCTCCGCaagagacagaaccaggtttgatagactctg
>TU1939657
CCAATCCACCACCAATCCACCACCAATCCACCACCAATCTACCACCAATCCACCACCAATCCAATACACCACCAATCCACCACCAATCCACCACCAATCCAATACACCACCAATCCAACACCAATCCACCACCAATCCACCACCAATCCAATACACCACCAATCCAACACCAATCCAACACCAATCCAACACCAATCCAACACCAATCCAACACCAATCCACCAATCCAACACCAATCCACCACCAATCCAACACCAATCCACCAATCTAACACCAATCCACCACCAATCCAACACCAATCCAACACTAATCCAATACCAATCTAACACCAATCCACCACCAATCCAACACCAATCCACCACCAATCCAACACCAATCCAACACTAATCCACCACCAATCCAATACCAATCCAATACCAATCCAATACCAATCCAGTAACCAATCCAATACCAACCCACCACCCATCCAACATCAATCCAACACCAATCCAACATCAATCCAACACCAATCCATCAGTAATCCACCCAATTAAAAGATGACCCTTTAGAAATGCAAAAGCATTTCAGAAGAAAAAGCAAGTGATTTGAAACAAGAGCTTCAGAATCTTCTAAGTCTCTACTTCAAAATACGACCAACGCCATTAGAATGTCACTACACTAATACTTCTCCTACGtgtaaaatgtggattgaccagattgttaactttcttcctcttgaaaagctcacgcATGACCTCCGCaagagacagaaccaggtttgatagactctg

Function

NR:

description
uncharacterized protein LOC111648517, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1939655 False 661 lncRNA 0.38 4 42438740 42440591
TU1939657 True 770 lncRNA 0.44 5 42439439 42440591

Neighbor

gene id symbol gene type direction distance location
LOC110499602 LOC106589930 coding upstream 19659 42416095 ~ 42419081 (+)
LOC110499494 LOC106589929 coding upstream 25707 42408262 ~ 42413033 (+)
parga LOC106589925 coding upstream 155952 42173980 ~ 42282788 (+)
LOC110499555 LOC106589919 coding upstream 576348 41830014 ~ 41862392 (+)
LOC118942019 NA coding upstream 742611 41688135 ~ 41696129 (+)
LOC110499605 LOC106590859 coding downstream 43953 42484544 ~ 42511247 (+)
LOC118942073 NA coding downstream 81946 42522510 ~ 42527008 (+)
LOC118942074 NA coding downstream 153413 42594004 ~ 42598619 (+)
LOC110499499 LOC106589923 coding downstream 215166 42655757 ~ 42660010 (+)
LOC110499501 sft2a coding downstream 304573 42745164 ~ 42774109 (+)
G1695798 NA non-coding upstream 44333 42392478 ~ 42394407 (+)
G1695795 NA non-coding upstream 50157 42388358 ~ 42388583 (+)
G1695781 NA non-coding upstream 84679 42353280 ~ 42354061 (+)
G1695780 NA non-coding upstream 88332 42350081 ~ 42350408 (+)
G1695779 NA non-coding upstream 90330 42348195 ~ 42348410 (+)
G1695816 NA non-coding downstream 3499 42444090 ~ 42445201 (+)
G1695817 NA non-coding downstream 5390 42445981 ~ 42446210 (+)
G1695818 NA non-coding downstream 7860 42448451 ~ 42448849 (+)
G1695819 NA non-coding downstream 8633 42449224 ~ 42449428 (+)
G1695820 NA non-coding downstream 8849 42449440 ~ 42449672 (+)
G1695272 NA other upstream 820235 41618027 ~ 41618505 (+)
G1693914 NA other upstream 2225787 40211522 ~ 40212953 (+)
G1693700 NA other upstream 2556115 39881958 ~ 39882625 (+)
G1693699 NA other upstream 2556897 39881349 ~ 39881843 (+)
G1693184 NA other upstream 3079105 39356345 ~ 39359635 (+)
G1696324 NA other downstream 339408 42779999 ~ 42780549 (+)
G1696541 NA other downstream 693036 43133627 ~ 43134013 (+)
LOC110499564 NA other downstream 696802 43137388 ~ 43148369 (+)

Expression


Co-expression Network