XLOC_003613 (CR457444.4)


Basic Information

Item Value
gene id XLOC_003613
gene name CR457444.4
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 36653213 ~ 36656765 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007040
TTCATCTTCATTGTTTTTCAGCTCTTTATGGTTCAGTCTTACAGATATCCTCATGTTCATGTTTCTCGAGCAGTCATATATGAGTTCAGTTCAGTGAACATCAGCTGTGAGACGCCGTCAGAGGCTTCAGTGACTCAGTGTTATTtctacacaaaaaacaaaaagcaggAAATAAAAGTCAGTCCACCATGTCAGCAGGAGTACACTGCTGCTGAAGTGCTCAGATGGGTAGGAGGAAAACCACCTGCAATAGTGGACATTCACTGTTACTACACAACATATGAGAGAGGCACAGAGATCTCATCAGCGGAGTCTGATTCTGCCACACTGACAGTTAAAGAAGGTCTTCCTCAGGCCAGACTGTCAGCGTCTGCTTCAGTTCTTCAGGAAACAGACACAGTGGAGCTGAGATGTGACAATACGGAAGAGCTGAAGATGGAAATGTGTTTCTTCAACAAATATGGAAGAGAAAGTAACTCatatctgaactcttcatgtcAGCTCTCACTCACTGCATCTCAGATCAGTGTTTGGTCTGGAGCTCAGAGTTCATCAGTGAGAATAATCTGCttctacactgtgaaaaatggaCAATATCAAGTACAATCTCCTCAGTCTGATCCAGTAACCATAACAGTCCagaCTCTTCACACTTCAACAGCTCATCCCCAAGCTCAACAACCAAAACCAGGTGGACTGCTTATAATTCTGGTTTCTACTGTTGGTGTCATTTTGGTTGGGTTCATTGGACTCATCTGTCTGTGCTGGCTTGCAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000103425

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007040 True 775 lncRNA 0.43 5 36653213 36656765

Neighbor

gene id symbol gene type direction distance location
XLOC_003611 CR457444.6 coding upstream 12358 36600242 ~ 36640855 (+)
XLOC_003612 CR457444.10 coding upstream 40049 36612354 ~ 36613164 (+)
XLOC_003610 CR457444.12 coding upstream 62725 36587329 ~ 36590488 (+)
XLOC_003609 CR457444.7 coding upstream 70841 36582258 ~ 36582372 (+)
XLOC_003608 CR457444.9 coding upstream 75595 36574375 ~ 36577618 (+)
XLOC_003614 CR457444.3 coding downstream 260 36657025 ~ 36658639 (+)
XLOC_003615 si:ch211-11c3.9 coding downstream 8594 36665359 ~ 36674376 (+)
XLOC_003616 si:ch211-11c3.11 coding downstream 18834 36675599 ~ 36683726 (+)
XLOC_003617 si:ch211-11c3.12 coding downstream 27094 36683859 ~ 36687267 (+)
XLOC_003618 parapinopsinb coding downstream 120848 36777613 ~ 36788797 (+)
XLOC_003369 CR854846.2 misc upstream 20530131 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 23941217 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 23958950 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 23967614 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 23973185 12679732 ~ 12680028 (+)
XLOC_003620 BX248521.3 non-coding downstream 337929 36994694 ~ 36994808 (+)
XLOC_003623 NA non-coding downstream 480035 37136800 ~ 37170438 (+)
XLOC_003626 CABZ01065569.1 non-coding downstream 557343 37214108 ~ 37214223 (+)
XLOC_003628 CR936337.1 non-coding downstream 707681 37364446 ~ 37364560 (+)

Expression


Co-expression Network