G1696432


Basic Information

Item Value
gene id G1696432
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 43125707 ~ 43128000 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1940485
tcaagtggtctgaataatGTCTGAATGCACTGCATATCAATATTTTAaatgtccaaaaatggatgtattAATTACAGATTGCGCCTTTAAAAACATAATTGGTAGGCCTCTTGATCACAAATGGTAATTTACCATTAAATATTGAGGGGATTATTTGAAGCAAAAtaggtgcattaccaccatcactactaccatcactactaccaccatcactaccatcatcactactactaccatcactaccaacATcactactccCATCACTACCACAATCACTTCTACCATCACCActatcactactaccatcaccaccaccaccatcactaccaccatcactactaccatcaccatcactactaccatcaccaccaccaccactcagaccatcactactaccaccaccaccatcactactaccatcaccaccaccatcactactaccatcaccaccatcactactaccaccatcaccaccatcactactaccaccatcaccaccaccacaatcactactaccaccactactaccaccatcactaccaccatcactactacatcactactaccatcactactaccatcaatactactaccatcactactaccaccatcaccatcactaccaacattactactactaccatcactactaccaccactactaccaccactactaccgccactactaccatcatcactaccacaTCACTACTACCAACattactaccatcaccatcactactaccaccaccaccaccatcactactaccatcaatactactaccatcaccactatcactcccaccatcactactaccatcaccaccatcactactaccatcaaccaccactatcactactaccaccaccaccaccatcactactaccaccaccatcactactaccaccaccatcactactaccaccaccactaccaccaccactactaccaccaccaccactaccaccaccaccaccaccaccactactaccatcactactaaagttatctagctagctagcagctcagTTTGCCTACAAAGACGCCTACTGTAGCCAGCAAGCTAGCTGGCAAATAATAACTGCCTCTGTTTTTTGGGGTccttacaaaaacaaaataatggTTAATATTCAGAATATTTTTGGTGGTAGCAAAGTGGCCGCCAGCAGCCATGTTGACAAATGAAGAAAATTATGTTTGTCACCAGAGTGGTTTAAAACATGTTGAGACGTTTGACTTCACCAGCGTAATCCACTTTAGATTGTATTAAATAAAAATTGCAGACTGTCGACCACACTTGATAAATTGAAAACCAGCAACAGGCAACAACTACCCTGACAGAAAACAGTGACGCACATGAAACACAGCACCCCTTCTACGGGAGTGTGGGGGTGAGGGTTCTTGAAGAGTATCATCCAATCAAAATCTTGCCGCTGGGAGCCAGCAGCCAATTTAAACTGTTTGTGCAAAACAAAATTCTCCTGACCTTCGAGGGAGGCGCGATAACAAAATGATTATGGAGGTATGGCAACGCATGCCCTTATACTCTACATCAAGTGTCCTTAATTGGACAATGATTTACTTGATTCTGGGCAGCTTTTAGCAGTGCAGAAATGCCAATTTTTCTATGGCCATATCACTTTCACGCTCATAAATCTGGTGGTTTAGCTCCCATTTTAGGCTGAGTCCCAATTGTTGTCACAGCGGAAGATTTTACAGTAATTTAATCAGAATGACAGCAGCATACTGTCATTTTATAGAAATGCCACCTTcaagttatatacagtaccagtcaaaacttaGACGCAGTTGTCAGGG
>TU1940486
tcaagtggtctgaataatGTCTGAATGCACTGCATATCAATATTTTAaatgtccaaaaatggatgtattAATTACAGATTGCGCCTTTAAAAACATAATTGGTAGGCCTCTTGATCACAAATGGTAATTTACCATTAAATATTGAGGGGATTATTTGAAGCAAAAtaggtgcattaccaccatcactaccaccatcactactaccatcactaccaccatcactaccaccatcactaccaccatcactaccaccatcactactaccaccatcactaccatcatcactactaccatcatcactaccatcactaccatcatcactactaccatcactaccatcactactaccaccaccactactaccatcatcactaccatcactaccaccatcacaacctccatcatcactactaccatcactaccaacATCACTACCACATCACTACCaacattactactaccatcatcactactaccatcaaTACTACCATCAatattaccaccaccactactaccatcaataCTACCATCAATACTACCATCAATACTACTACcaacactaccaccatcactactaccaccatcactaccaccatcactactaccatcactactaccaccatcactaccatcatcactactactaccatcactaccaacATCACTACCacAATCACTTCTACCATCACCActatcactactaccatcaccaccaccaccatcactaccaccatcactactaccatcaccatcactactaccatcaccaccaccaccactcagaccatcactactaccaccaccaccatcactactaccatcaccaccaccatcactactaccatcaccaccatcactactaccaccatcaccaccatcactactaccaccatcaccaccaccacaatcactactaccaccactactaccaccatcactaccaccatcactactacatcactactaccatcactactaccatcaatactactaccatcactactaccaccatcaccatcactaccaacattactactactaccatcactactaccaccactactaccaccactactaccgccactactaccatcatcactaccacaTCACTACTACCAACattactaccatcaccatcactactaccaccaccaccaccatcactactaccatcaatactactaccatcaccactatcactcccaccatcactactaccatcaccaccatcactactaccatcaaccaccactatcactactaccaccaccaccaccatcactactaccaccaccatcactactaccaccaccatcactactaccaccaccactaccaccaccactactaccaccaccaccactaccaccaccaccaccaccaccactactaccatcactactaaagttatctagctagctagcagctcagTTTGCCTACAAAGACGCCTACTGTAGCCAGCAAGCTAGCTGGCAAATAATAACTGCCTCTGTTTTTTGGGGTccttacaaaaacaaaataatggTTAATATTCAGAATATTTTTGGTGGTAGCAAAGTGGCCGCCAGCAGCCATGTTGACAAATGAAGAAAATTATGTTTGTCACCAGAGTGGTTTAAAACATGTTGAGACGTTTGACTTCACCAGCGTAATCCACTTTAGATTGTATTAAATAAAAATTGCAGACTGTCGACCACACTTGATAAATTGAAAACCAGCAACAGGCAACAACTACCCTGACAGAAAACAGTGACGCACATGAAACACAGCACCCCTTCTACGGGAGTGTGGGGGTGAGGGTTCTTGAAGAGTATCATCCAATCAAAATCTTGCCGCTGGGAGCCAGCAGCCAATTTAAACTGTTTGTGCAAAACAAAATTCTCCTGACCTTCGAGGGAGGCGCGATAACAAAATGATTATGGAGGTATGGCAACGCATGCCCTTATACTCTACATCAAGTGTCCTTAATTGGACAATGATTTACTTGATTCTGGGCAGCTTTTAGCAGTGCAGAAATGCCAATTTTTCTATGGCCATATCACTTTCACGCTCATAAATCTGGTGGTTTAGCTCCCATTTTAGGCTGAGTCCCAATTGTTGTCACAGCGGAAGATTTTACAGTAATTTAATCAGAATGACAGCAGCATACTGTCATTTTATAGAAATGCCACCTTcaagttatatacagtaccagtcaaaacttaGACGCAGTTGTCAGGG
>TU1940487
tcaagtggtctgaataatGTCTGAATGCACTGCATATCAATATTTTAaatgtccaaaaatggatgtattAATTACAGATTGCGCCTTTAAAAACATAATTGGTAGGCCTCTTGATCACAAATGGTAATTTACCATTAAATATTGAGGGGATTATTTGAAGCAAAAtaggtgcattaccaccatcactaccaccatcactactaccatcactaccaccatcactaccaccatcactaccaccatcactactaccatcactaccaacATCACTACCacatcactactaccatcaccaccactactccCATCACTACCACAATCACTTCTACCATCACCActatcactactaccatcaccaccaccaccatcactaccaccatcactactaccatcaccatcactactaccatcaccaccaccaccactcagaccatcactactaccaccaccaccatcactactaccatcaccaccaccatcactactaccatcaccaccatcactactaccaccatcaccaccatcactactaccaccatcaccaccaccacaatcactactaccaccactactaccaccatcactaccaccatcactactacatcactactaccatcactactaccatcaatactactaccatcactactaccaccatcaccatcactaccaacattactactactaccatcactactaccaccactactaccaccactactaccgccactactaccatcatcactaccacaTCACTACTACCAACattactaccatcaccatcactactaccaccaccaccaccatcactactaccatcaatactactaccatcaccactatcactcccaccatcactactaccatcaccaccatcactactaccatcaaccaccactatcactactaccaccaccaccaccatcactactaccaccaccatcactactaccaccaccatcactactaccaccaccactaccaccaccactactaccaccaccaccactaccaccaccaccaccaccaccactactaccatcactactaaagttatctagctagctagcagctcagTTTGCCTACAAAGACGCCTACTGTAGCCAGCAAGCTAGCTGGCAAATAATAACTGCCTCTGTTTTTTGGGGTccttacaaaaacaaaataatggTTAATATTCAGAATATTTTTGGTGGTAGCAAAGTGGCCGCCAGCAGCCATGTTGACAAATGAAGAAAATTATGTTTGTCACCAGAGTGGTTTAAAACATGTTGAGACGTTTGACTTCACCAGCGTAATCCACTTTAGATTGTATTAAATAAAAATTGCAGACTGTCGACCACACTTGATAAATTGAAAACCAGCAACAGGCAACAACTACCCTGACAGAAAACAGTGACGCACATGAAACACAGCACCCCTTCTACGGGAGTGTGGGGGTGAGGGTTCTTGAAGAGTATCATCCAATCAAAATCTTGCCGCTGGGAGCCAGCAGCCAATTTAAACTGTTTGTGCAAAACAAAATTCTCCTGACCTTCGAGGGAGGCGCGATAACAAAATGATTATGGAGGTATGGCAACGCATGCCCTTATACTCTACATCAAGTGTCCTTAATTGGACAATGATTTACTTGATTCTGGGCAGCTTTTAGCAGTGCAGAAATGCCAATTTTTCTATGGCCATATCACTTTCACGCTCATAAATCTGGTGGTTTAGCTCCCATTTTAGGCTGAGTCCCAATTGTTGTCACAGCGGAAGATTTTACAGTAATTTAATCAGAATGACAGCAGCATACTGTCATTTTATAGAAATGCCACCTTcaagttatatacagtaccagtcaaaacttaGACGCAGTTGTCAGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1940485 False 1819 lncRNA 0.43 4 43125707 43128000
TU1940486 False 2220 lncRNA 0.43 3 43125707 43128000
TU1940487 True 1866 lncRNA 0.43 3 43125707 43128000

Neighbor

gene id symbol gene type direction distance location
LOC110499502 pde10a coding upstream 3812 42950949 ~ 43125594 (+)
tbxtb LOC106589941 coding upstream 273968 42846046 ~ 42851739 (+)
LOC118942075 NA coding upstream 298615 42803589 ~ 42827234 (+)
LOC110499501 sft2a coding upstream 351598 42745164 ~ 42774109 (+)
LOC110499499 LOC106589923 coding upstream 465697 42655757 ~ 42660010 (+)
LOC110499564 NA coding downstream 9388 43137388 ~ 43148369 (+)
LOC110510394 NA coding downstream 243693 43371693 ~ 43402764 (+)
LOC118942021 micu1 coding downstream 320714 43448714 ~ 43494181 (+)
LOC110499505 LOC106589952 coding downstream 470087 43552789 ~ 43615700 (+)
LOC110499517 LOC106589992 coding downstream 849280 43977280 ~ 43987101 (+)
G1696529 NA non-coding upstream 14638 43107649 ~ 43111069 (+)
G1696528 NA non-coding upstream 15866 43106753 ~ 43109841 (+)
G1696526 NA non-coding upstream 19032 43100523 ~ 43106675 (+)
G1696520 NA non-coding upstream 34274 43086557 ~ 43091433 (+)
G1696542 NA non-coding downstream 6161 43134161 ~ 43134694 (+)
G1696431 NA non-coding downstream 22604 43150604 ~ 43155908 (+)
G1696549 NA non-coding downstream 29813 43157813 ~ 43158134 (+)
G1696553 NA non-coding downstream 43463 43171463 ~ 43172287 (+)
G1696554 NA non-coding downstream 44440 43172440 ~ 43172684 (+)
G1696324 NA other upstream 345158 42779999 ~ 42780549 (+)
LOC118942073 NA other upstream 598699 42522510 ~ 42527008 (+)
LOC110499605 LOC106590859 other upstream 614460 42484544 ~ 42511247 (+)
G1695272 NA other upstream 1507202 41618027 ~ 41618505 (+)
G1693914 NA other upstream 2912754 40211522 ~ 40212953 (+)
G1696541 NA other downstream 5627 43133627 ~ 43134013 (+)
G1696563 NA other downstream 79559 43207559 ~ 43209518 (+)
G1696904 NA other downstream 495484 43623484 ~ 43626360 (+)
G1696905 NA other downstream 498388 43626388 ~ 43661355 (+)

Expression


Co-expression Network